Magnesium in PDB 5god: LYS27-Linked Di-Ubiquitin

The structure of LYS27-Linked Di-Ubiquitin, PDB code: 5god was solved by S.Gao, M.Pan, Y.Zheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.28 / 1.15
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	38.240, 38.260, 48.000, 98.15, 98.15, 109.67
R / Rfree (%)	20.2 / 22.2

The binding sites of Magnesium atom in the LYS27-Linked Di-Ubiquitin (pdb code 5god). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the LYS27-Linked Di-Ubiquitin, PDB code: 5god:

Magnesium binding site 1 out of 1 in the LYS27-Linked Di-Ubiquitin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of LYS27-Linked Di-Ubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:29.5 occ:1.00 O B:HOH239 2.0 20.6 1.0 OD1 B:ASP32 2.0 13.9 1.0 O B:HOH273 2.0 20.6 1.0 O B:HOH225 2.0 17.6 1.0 O B:HOH230 2.0 16.8 1.0 O B:HOH240 2.0 17.5 1.0 CG B:ASP32 3.1 14.9 1.0 OD2 B:ASP32 3.5 17.5 1.0 O B:ALA28 3.9 11.5 1.0 OE1 B:GLN31 4.3 13.7 1.0 CB B:ASP32 4.4 13.8 1.0 N B:ASP32 4.6 11.6 1.0 CA B:ASP32 4.6 12.6 1.0 C B:ALA28 4.8 11.3 1.0 CB B:ALA28 4.9 12.3 1.0 CD B:GLN31 5.0 13.4 1.0

S.Gao, M.Pan, Y.Zheng, Y.Huang, Q.Zheng, D.Sun, L.Lu, X.Tan, X.Tan, H.Lan, J.Wang, T.Wang, J.Wang, L.Liu. Monomer/Oligomer Quasi-Racemic Protein Crystallography J.Am.Chem.Soc. V. 138 14497 2016.
ISSN: ESSN 1520-5126
PubMed: 27768314
DOI: 10.1021/JACS.6B09545