Magnesium in PDB 5gof: Truncated Mitofusin-1, Gtp-Bound

The structure of Truncated Mitofusin-1, Gtp-Bound, PDB code: 5gof was solved by Y.L.Cao, S.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.11 / 1.60
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	70.579, 72.461, 95.344, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 21.5

The structure of Truncated Mitofusin-1, Gtp-Bound also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Truncated Mitofusin-1, Gtp-Bound (pdb code 5gof). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Truncated Mitofusin-1, Gtp-Bound, PDB code: 5gof:

Magnesium binding site 1 out of 1 in the Truncated Mitofusin-1, Gtp-Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Truncated Mitofusin-1, Gtp-Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:29.4 occ:1.00 O A:HOH1106 1.9 28.1 1.0 O1G A:GTP901 2.0 33.5 1.0 O1B A:GTP901 2.1 26.2 1.0 O A:HOH1224 2.1 28.1 1.0 O A:HOH1102 2.2 28.8 1.0 OG A:SER89 2.2 27.4 1.0 CB A:SER89 3.2 28.4 1.0 PG A:GTP901 3.2 35.8 1.0 PB A:GTP901 3.3 29.9 1.0 O3B A:GTP901 3.5 30.7 1.0 O A:HOH1001 3.7 58.0 1.0 OD2 A:ASP178 3.8 28.5 1.0 N A:SER89 3.9 24.4 1.0 O A:HOH1148 3.9 57.1 1.0 O A:HOH1012 4.0 51.5 1.0 O3G A:GTP901 4.1 43.1 1.0 O1A A:GTP901 4.2 29.7 1.0 O2B A:GTP901 4.2 30.7 1.0 CA A:SER89 4.2 25.8 1.0 OD1 A:ASP178 4.2 28.6 1.0 O2G A:GTP901 4.3 33.2 1.0 CG A:ASP178 4.4 28.7 1.0 O3A A:GTP901 4.4 29.8 1.0 PA A:GTP901 4.7 29.4 1.0 CB A:LYS88 4.9 26.6 1.0

Y.L.Cao, S.Meng, Y.Chen, J.X.Feng, D.D.Gu, B.Yu, Y.J.Li, J.Y.Yang, S.Liao, D.C.Chan, S.Gao. MFN1 Structures Reveal Nucleotide-Triggered Dimerization Critical For Mitochondrial Fusion Nature V. 542 372 2017.
ISSN: ESSN 1476-4687
PubMed: 28114303
DOI: 10.1038/NATURE21077