Magnesium in PDB 5gpa: Structural Analysis of Fatty Acid Degradation Regulator Fadr From Bacillus Halodurans

The structure of Structural Analysis of Fatty Acid Degradation Regulator Fadr From Bacillus Halodurans, PDB code: 5gpa was solved by J.Y.Lee, H.K.Yeo, Y.W.Park, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.69 / 2.05
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	56.393, 56.393, 199.607, 90.00, 90.00, 120.00
R / Rfree (%)	20.4 / 26.1

The binding sites of Magnesium atom in the Structural Analysis of Fatty Acid Degradation Regulator Fadr From Bacillus Halodurans (pdb code 5gpa). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structural Analysis of Fatty Acid Degradation Regulator Fadr From Bacillus Halodurans, PDB code: 5gpa:

Magnesium binding site 1 out of 1 in the Structural Analysis of Fatty Acid Degradation Regulator Fadr From Bacillus Halodurans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural Analysis of Fatty Acid Degradation Regulator Fadr From Bacillus Halodurans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:31.2 occ:0.00 O B:HOH343 2.4 42.5 1.0 O B:HOH352 2.6 40.9 1.0 OE1 A:GLU163 3.6 35.6 1.0 OD2 A:ASP162 3.9 33.2 1.0 OD2 B:ASP162 4.1 35.9 1.0 O A:GLY159 4.1 20.5 1.0 O A:HOH318 4.2 46.2 1.0 O B:GLY159 4.4 21.4 1.0 N A:GLU163 4.4 22.3 1.0 CB A:GLU163 4.5 22.9 1.0 CA B:GLY159 4.6 22.2 1.0 CB A:ASP162 4.6 28.5 1.0 CA A:GLU163 4.6 23.3 1.0 OE1 B:GLU163 4.7 37.0 1.0 CD A:GLU163 4.7 34.4 1.0 CG A:ASP162 4.7 34.3 1.0 CB B:ASP162 4.8 27.5 1.0 CA A:GLY159 4.9 21.0 1.0 C A:ASP162 4.9 25.1 1.0 C A:GLY159 4.9 23.6 1.0 CG B:ASP162 4.9 33.1 1.0 C B:GLY159 5.0 24.2 1.0

H.K.Yeo, Y.W.Park, J.Y.Lee. Structural Basis of Operator Sites Recognition and Effector Binding in the Tetr Family Transcription Regulator Fadr. Nucleic Acids Res. V. 45 4244 2017.
ISSN: ESSN 1362-4962
PubMed: 28160603
DOI: 10.1093/NAR/GKX009