Magnesium in PDB 5gsz: Crystal Structure of the KIF19A Motor Domain Complexed with Mg-Adp

The structure of Crystal Structure of the KIF19A Motor Domain Complexed with Mg-Adp, PDB code: 5gsz was solved by D.Wang, R.Nitta, N.Hirokawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.32 / 2.72
Space group	P 42 21 2
Cell size a, b, c (Å), α, β, γ (°)	122.604, 122.604, 56.198, 90.00, 90.00, 90.00
R / Rfree (%)	22.2 / 30.2

The binding sites of Magnesium atom in the Crystal Structure of the KIF19A Motor Domain Complexed with Mg-Adp (pdb code 5gsz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the KIF19A Motor Domain Complexed with Mg-Adp, PDB code: 5gsz:

Magnesium binding site 1 out of 1 in the Crystal Structure of the KIF19A Motor Domain Complexed with Mg-Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the KIF19A Motor Domain Complexed with Mg-Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:35.5 occ:1.00 O A:HOH506 1.9 36.6 1.0 O A:HOH523 2.1 42.7 1.0 OG1 A:THR111 2.1 38.1 1.0 O A:HOH518 2.2 40.3 1.0 O A:HOH502 2.4 37.7 1.0 O1B A:ADP401 2.5 40.0 1.0 H A:THR111 3.3 37.0 1.0 CB A:THR111 3.4 35.6 1.0 O3B A:ADP401 3.4 40.2 1.0 PB A:ADP401 3.4 40.8 1.0 HB A:THR111 3.5 35.6 1.0 O2A A:ADP401 3.7 39.0 1.0 OD2 A:ASP250 3.8 45.5 1.0 HH12 A:ARG206 3.8 42.5 1.0 N A:THR111 4.0 37.0 1.0 HB2 A:LYS110 4.0 38.3 1.0 HH22 A:ARG206 4.1 44.1 1.0 HE2 A:LYS110 4.1 41.1 1.0 HG21 A:THR111 4.2 37.4 1.0 CA A:THR111 4.3 34.7 1.0 OD1 A:ASP250 4.3 40.2 1.0 CG2 A:THR111 4.4 37.4 1.0 NH1 A:ARG206 4.4 42.5 1.0 O2B A:ADP401 4.4 39.3 1.0 O A:HOH510 4.4 39.8 1.0 CG A:ASP250 4.5 43.5 1.0 HZ3 A:LYS110 4.5 38.1 1.0 HA A:THR111 4.6 34.7 1.0 O3A A:ADP401 4.6 43.2 1.0 NH2 A:ARG206 4.6 44.1 1.0 HG23 A:THR111 4.6 37.4 1.0 PA A:ADP401 4.7 38.6 1.0 HG21 A:THR216 4.7 59.1 1.0 HZ2 A:LYS110 4.8 38.1 1.0 CZ A:ARG206 4.9 44.9 1.0 HH11 A:ARG206 4.9 42.5 1.0 CB A:LYS110 4.9 38.3 1.0 HB3 A:LYS110 4.9 38.3 1.0 NZ A:LYS110 5.0 38.1 1.0 CE A:LYS110 5.0 41.1 1.0 HB A:THR216 5.0 66.0 1.0

D.Wang, R.Nitta, M.Morikawa, H.Yajima, S.Inoue, H.Shigematsu, M.Kikkawa, N.Hirokawa. Motility and Microtubule Depolymerization Mechanisms of the Kinesin-8 Motor, KIF19A Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27690357
DOI: 10.7554/ELIFE.18101