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Magnesium in PDB 5gvx: Structural Insight Into Dephosphorylation By Trehalose 6-Phosphate Phosphatase (OTSB2) From Mycobacterium Tuberculosis

Enzymatic activity of Structural Insight Into Dephosphorylation By Trehalose 6-Phosphate Phosphatase (OTSB2) From Mycobacterium Tuberculosis

All present enzymatic activity of Structural Insight Into Dephosphorylation By Trehalose 6-Phosphate Phosphatase (OTSB2) From Mycobacterium Tuberculosis:
3.1.3.12;

Protein crystallography data

The structure of Structural Insight Into Dephosphorylation By Trehalose 6-Phosphate Phosphatase (OTSB2) From Mycobacterium Tuberculosis, PDB code: 5gvx was solved by S.Shan, H.Min, T.Liu, D.Jiang, Z.Rao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.76 / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.669, 89.069, 105.480, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 25.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structural Insight Into Dephosphorylation By Trehalose 6-Phosphate Phosphatase (OTSB2) From Mycobacterium Tuberculosis (pdb code 5gvx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structural Insight Into Dephosphorylation By Trehalose 6-Phosphate Phosphatase (OTSB2) From Mycobacterium Tuberculosis, PDB code: 5gvx:

Magnesium binding site 1 out of 1 in 5gvx

Go back to Magnesium Binding Sites List in 5gvx
Magnesium binding site 1 out of 1 in the Structural Insight Into Dephosphorylation By Trehalose 6-Phosphate Phosphatase (OTSB2) From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural Insight Into Dephosphorylation By Trehalose 6-Phosphate Phosphatase (OTSB2) From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:25.0
occ:0.00
 OD1 A:ASP330 1.9 26.6 1.0
O A:ASP149 1.9 25.4 1.0
O A:HOH504 2.1 23.3 1.0
OD2 A:ASP147 2.4 25.9 1.0
O A:HOH501 2.6 30.0 1.0
CG A:ASP330 2.8 27.1 1.0
C A:ASP149 3.1 22.5 1.0
OD2 A:ASP330 3.2 37.5 1.0
CG A:ASP147 3.4 25.4 1.0
OD1 A:ASP147 3.7 21.9 1.0
CA A:ASP149 4.0 22.7 1.0
CB A:ASP149 4.0 20.4 1.0
CB A:ASP330 4.1 22.8 1.0
N A:GLY150 4.1 23.8 1.0
N A:ASP149 4.2 22.6 1.0
CA A:GLY150 4.3 25.1 1.0
OD2 A:ASP334 4.6 27.7 1.0
CB A:ASP331 4.7 28.4 1.0
CB A:ASP147 4.7 22.4 1.0
C A:GLY150 5.0 26.2 1.0

Reference:

S.Shan, H.Min, T.Liu, D.Jiang, Z.Rao. Structural Insight Into Dephosphorylation By Trehalose 6-Phosphate Phosphatase (OTSB2) From Mycobacterium Tuberculosis. Faseb J. V. 30 3989 2016.
ISSN: ESSN 1530-6860
PubMed: 27572957
DOI: 10.1096/FJ.201600463R
Page generated: Mon Dec 14 20:25:34 2020

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