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Magnesium in PDB 5gyn: Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase (Chronophin) Mutant - C221S

Enzymatic activity of Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase (Chronophin) Mutant - C221S

All present enzymatic activity of Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase (Chronophin) Mutant - C221S:
3.1.3.3; 3.1.3.74;

Protein crystallography data

The structure of Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase (Chronophin) Mutant - C221S, PDB code: 5gyn was solved by H.J.Lee, H.J.Cho, B.S.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.98 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 54.578, 54.578, 214.697, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 23.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase (Chronophin) Mutant - C221S (pdb code 5gyn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase (Chronophin) Mutant - C221S, PDB code: 5gyn:

Magnesium binding site 1 out of 1 in 5gyn

Go back to Magnesium Binding Sites List in 5gyn
Magnesium binding site 1 out of 1 in the Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase (Chronophin) Mutant - C221S


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase (Chronophin) Mutant - C221S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:21.2
occ:1.00
 OD2 A:ASP25 2.0 25.6 1.0
OD1 A:ASP238 2.0 24.7 1.0
O A:HOH459 2.0 22.2 1.0
O A:HOH501 2.1 23.2 1.0
O A:HOH430 2.1 25.1 1.0
O A:ASP27 2.2 24.3 1.0
CG A:ASP25 3.0 28.6 1.0
CG A:ASP238 3.1 25.3 1.0
OD1 A:ASP25 3.4 24.8 1.0
C A:ASP27 3.4 22.1 1.0
OD2 A:ASP238 3.5 22.1 1.0
OD2 A:ASP243 3.9 27.7 1.0
O A:HOH484 3.9 32.0 1.0
CA A:ASP27 4.2 25.0 1.0
N A:ASP27 4.3 22.9 1.0
CB A:ASP25 4.3 22.3 1.0
O A:HOH532 4.3 35.2 1.0
CB A:ASP238 4.4 23.2 1.0
N A:GLY28 4.4 24.2 1.0
CB A:ASP27 4.4 28.4 1.0
O A:HOH536 4.4 40.2 1.0
CA A:GLY28 4.5 22.1 1.0
CG2 A:VAL29 4.5 24.4 1.0
N A:ASP238 4.6 20.3 1.0
O A:HOH494 4.7 28.0 1.0
CG A:ASP243 4.8 28.8 1.0
C A:CYS26 4.8 28.6 1.0
OD1 A:ASP243 4.9 28.3 1.0
C A:GLY28 4.9 24.9 1.0
N A:CYS26 4.9 25.3 1.0
CA A:ASP238 5.0 21.6 1.0
CB A:ARG239 5.0 28.9 1.0

Reference:

H.J.Lee, H.J.Cho, B.S.Kang. Crystal Structure of Human Pyridoxal 5'-Phosphate Phosphatase (Chronophin) Mutant - C221S To Be Published.
Page generated: Sun Sep 29 15:31:22 2024

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