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Magnesium in PDB 5h1b: Human RAD51 Presynaptic Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human RAD51 Presynaptic Complex (pdb code 5h1b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Human RAD51 Presynaptic Complex, PDB code: 5h1b:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 5h1b

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Magnesium binding site 1 out of 3 in the Human RAD51 Presynaptic Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human RAD51 Presynaptic Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:30.0
occ:1.00
O2B A:ANP600 1.9 20.0 1.0
O1B A:ANP600 2.1 20.0 1.0
OG1 A:THR134 2.2 20.0 1.0
PB A:ANP600 2.2 20.0 1.0
CG2 A:THR134 2.3 20.0 1.0
N A:THR134 2.5 34.8 1.0
CB A:THR134 2.6 20.0 1.0
O3A A:ANP600 2.9 20.0 1.0
CA A:THR134 3.1 37.0 1.0
O2A A:ANP600 3.2 20.0 1.0
CG A:LYS133 3.3 20.0 1.0
PA A:ANP600 3.4 20.0 1.0
C A:LYS133 3.7 32.9 1.0
N A:LYS133 3.7 34.7 1.0
O1A A:ANP600 3.7 20.0 1.0
N3B A:ANP600 3.8 20.0 1.0
NZ A:LYS133 4.0 20.0 1.0
CA A:LYS133 4.1 32.2 1.0
C A:THR134 4.1 38.0 1.0
N A:GLN135 4.2 40.6 1.0
CE A:LYS133 4.2 20.0 1.0
CB A:LYS133 4.2 20.0 1.0
C A:GLY132 4.3 36.0 1.0
CD A:LYS133 4.3 20.0 1.0
O2G A:ANP600 4.6 20.0 1.0
O3G A:ANP600 4.6 20.0 1.0
PG A:ANP600 4.6 20.0 1.0
CA A:GLY132 4.6 37.0 1.0
N A:GLY132 4.6 38.7 1.0
O A:LYS133 4.7 32.7 1.0
OG1 A:THR131 4.8 20.0 1.0
O5' A:ANP600 4.9 20.0 1.0
O A:GLY132 4.9 36.9 1.0

Magnesium binding site 2 out of 3 in 5h1b

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Magnesium binding site 2 out of 3 in the Human RAD51 Presynaptic Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human RAD51 Presynaptic Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:30.0
occ:1.00
O2B B:ANP600 1.9 20.0 1.0
O1B B:ANP600 2.1 20.0 1.0
OG1 B:THR134 2.2 20.0 1.0
PB B:ANP600 2.2 20.0 1.0
CG2 B:THR134 2.3 20.0 1.0
N B:THR134 2.5 34.8 1.0
CB B:THR134 2.6 20.0 1.0
O3A B:ANP600 2.9 20.0 1.0
CA B:THR134 3.1 37.0 1.0
O2A B:ANP600 3.2 20.0 1.0
CG B:LYS133 3.3 20.0 1.0
PA B:ANP600 3.4 20.0 1.0
C B:LYS133 3.7 32.9 1.0
N B:LYS133 3.7 34.7 1.0
O1A B:ANP600 3.7 20.0 1.0
N3B B:ANP600 3.8 20.0 1.0
NZ B:LYS133 4.0 20.0 1.0
CA B:LYS133 4.1 32.2 1.0
C B:THR134 4.1 38.0 1.0
N B:GLN135 4.2 40.6 1.0
CE B:LYS133 4.2 20.0 1.0
CB B:LYS133 4.2 20.0 1.0
C B:GLY132 4.3 36.0 1.0
CD B:LYS133 4.3 20.0 1.0
O2G B:ANP600 4.6 20.0 1.0
O3G B:ANP600 4.6 20.0 1.0
PG B:ANP600 4.6 20.0 1.0
CA B:GLY132 4.6 37.0 1.0
N B:GLY132 4.6 38.7 1.0
O B:LYS133 4.7 32.7 1.0
OG1 B:THR131 4.8 20.0 1.0
O5' B:ANP600 4.9 20.0 1.0
O B:GLY132 4.9 36.9 1.0

Magnesium binding site 3 out of 3 in 5h1b

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Magnesium binding site 3 out of 3 in the Human RAD51 Presynaptic Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human RAD51 Presynaptic Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:30.0
occ:1.00
O2B C:ANP600 1.9 20.0 1.0
O1B C:ANP600 2.1 20.0 1.0
OG1 C:THR134 2.2 20.0 1.0
PB C:ANP600 2.2 20.0 1.0
CG2 C:THR134 2.3 20.0 1.0
N C:THR134 2.5 34.8 1.0
CB C:THR134 2.6 20.0 1.0
O3A C:ANP600 2.9 20.0 1.0
CA C:THR134 3.1 37.0 1.0
O2A C:ANP600 3.2 20.0 1.0
CG C:LYS133 3.3 20.0 1.0
PA C:ANP600 3.4 20.0 1.0
C C:LYS133 3.7 32.9 1.0
N C:LYS133 3.7 34.7 1.0
O1A C:ANP600 3.7 20.0 1.0
N3B C:ANP600 3.8 20.0 1.0
NZ C:LYS133 4.0 20.0 1.0
CA C:LYS133 4.1 32.2 1.0
C C:THR134 4.1 38.0 1.0
N C:GLN135 4.2 40.6 1.0
CE C:LYS133 4.2 20.0 1.0
CB C:LYS133 4.2 20.0 1.0
C C:GLY132 4.3 36.0 1.0
CD C:LYS133 4.3 20.0 1.0
O2G C:ANP600 4.6 20.0 1.0
O3G C:ANP600 4.6 20.0 1.0
PG C:ANP600 4.6 20.0 1.0
CA C:GLY132 4.6 37.0 1.0
N C:GLY132 4.6 38.7 1.0
O C:LYS133 4.7 32.7 1.0
OG1 C:THR131 4.8 20.0 1.0
O5' C:ANP600 4.9 20.0 1.0
O C:GLY132 4.9 36.9 1.0

Reference:

J.Xu, L.Zhao, Y.Xu, W.Zhao, P.Sung, H.W.Wang. Cryo-Em Structures of Human RAD51 Recombinase Filaments During Catalysis of Dna-Strand Exchange Nat. Struct. Mol. Biol. V. 24 40 2017.
ISSN: ESSN 1545-9985
PubMed: 27941862
DOI: 10.1038/NSMB.3336
Page generated: Sun Sep 29 15:31:47 2024

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