Magnesium in PDB 5h1b: Human RAD51 Presynaptic Complex

The binding sites of Magnesium atom in the Human RAD51 Presynaptic Complex (pdb code 5h1b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Human RAD51 Presynaptic Complex, PDB code: 5h1b:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Human RAD51 Presynaptic Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human RAD51 Presynaptic Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:30.0 occ:1.00 O2B A:ANP600 1.9 20.0 1.0 O1B A:ANP600 2.1 20.0 1.0 OG1 A:THR134 2.2 20.0 1.0 PB A:ANP600 2.2 20.0 1.0 CG2 A:THR134 2.3 20.0 1.0 N A:THR134 2.5 34.8 1.0 CB A:THR134 2.6 20.0 1.0 O3A A:ANP600 2.9 20.0 1.0 CA A:THR134 3.1 37.0 1.0 O2A A:ANP600 3.2 20.0 1.0 CG A:LYS133 3.3 20.0 1.0 PA A:ANP600 3.4 20.0 1.0 C A:LYS133 3.7 32.9 1.0 N A:LYS133 3.7 34.7 1.0 O1A A:ANP600 3.7 20.0 1.0 N3B A:ANP600 3.8 20.0 1.0 NZ A:LYS133 4.0 20.0 1.0 CA A:LYS133 4.1 32.2 1.0 C A:THR134 4.1 38.0 1.0 N A:GLN135 4.2 40.6 1.0 CE A:LYS133 4.2 20.0 1.0 CB A:LYS133 4.2 20.0 1.0 C A:GLY132 4.3 36.0 1.0 CD A:LYS133 4.3 20.0 1.0 O2G A:ANP600 4.6 20.0 1.0 O3G A:ANP600 4.6 20.0 1.0 PG A:ANP600 4.6 20.0 1.0 CA A:GLY132 4.6 37.0 1.0 N A:GLY132 4.6 38.7 1.0 O A:LYS133 4.7 32.7 1.0 OG1 A:THR131 4.8 20.0 1.0 O5' A:ANP600 4.9 20.0 1.0 O A:GLY132 4.9 36.9 1.0

Magnesium binding site 2 out of 3 in the Human RAD51 Presynaptic Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human RAD51 Presynaptic Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:30.0 occ:1.00 O2B B:ANP600 1.9 20.0 1.0 O1B B:ANP600 2.1 20.0 1.0 OG1 B:THR134 2.2 20.0 1.0 PB B:ANP600 2.2 20.0 1.0 CG2 B:THR134 2.3 20.0 1.0 N B:THR134 2.5 34.8 1.0 CB B:THR134 2.6 20.0 1.0 O3A B:ANP600 2.9 20.0 1.0 CA B:THR134 3.1 37.0 1.0 O2A B:ANP600 3.2 20.0 1.0 CG B:LYS133 3.3 20.0 1.0 PA B:ANP600 3.4 20.0 1.0 C B:LYS133 3.7 32.9 1.0 N B:LYS133 3.7 34.7 1.0 O1A B:ANP600 3.7 20.0 1.0 N3B B:ANP600 3.8 20.0 1.0 NZ B:LYS133 4.0 20.0 1.0 CA B:LYS133 4.1 32.2 1.0 C B:THR134 4.1 38.0 1.0 N B:GLN135 4.2 40.6 1.0 CE B:LYS133 4.2 20.0 1.0 CB B:LYS133 4.2 20.0 1.0 C B:GLY132 4.3 36.0 1.0 CD B:LYS133 4.3 20.0 1.0 O2G B:ANP600 4.6 20.0 1.0 O3G B:ANP600 4.6 20.0 1.0 PG B:ANP600 4.6 20.0 1.0 CA B:GLY132 4.6 37.0 1.0 N B:GLY132 4.6 38.7 1.0 O B:LYS133 4.7 32.7 1.0 OG1 B:THR131 4.8 20.0 1.0 O5' B:ANP600 4.9 20.0 1.0 O B:GLY132 4.9 36.9 1.0

Magnesium binding site 3 out of 3 in the Human RAD51 Presynaptic Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human RAD51 Presynaptic Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:30.0 occ:1.00 O2B C:ANP600 1.9 20.0 1.0 O1B C:ANP600 2.1 20.0 1.0 OG1 C:THR134 2.2 20.0 1.0 PB C:ANP600 2.2 20.0 1.0 CG2 C:THR134 2.3 20.0 1.0 N C:THR134 2.5 34.8 1.0 CB C:THR134 2.6 20.0 1.0 O3A C:ANP600 2.9 20.0 1.0 CA C:THR134 3.1 37.0 1.0 O2A C:ANP600 3.2 20.0 1.0 CG C:LYS133 3.3 20.0 1.0 PA C:ANP600 3.4 20.0 1.0 C C:LYS133 3.7 32.9 1.0 N C:LYS133 3.7 34.7 1.0 O1A C:ANP600 3.7 20.0 1.0 N3B C:ANP600 3.8 20.0 1.0 NZ C:LYS133 4.0 20.0 1.0 CA C:LYS133 4.1 32.2 1.0 C C:THR134 4.1 38.0 1.0 N C:GLN135 4.2 40.6 1.0 CE C:LYS133 4.2 20.0 1.0 CB C:LYS133 4.2 20.0 1.0 C C:GLY132 4.3 36.0 1.0 CD C:LYS133 4.3 20.0 1.0 O2G C:ANP600 4.6 20.0 1.0 O3G C:ANP600 4.6 20.0 1.0 PG C:ANP600 4.6 20.0 1.0 CA C:GLY132 4.6 37.0 1.0 N C:GLY132 4.6 38.7 1.0 O C:LYS133 4.7 32.7 1.0 OG1 C:THR131 4.8 20.0 1.0 O5' C:ANP600 4.9 20.0 1.0 O C:GLY132 4.9 36.9 1.0

J.Xu, L.Zhao, Y.Xu, W.Zhao, P.Sung, H.W.Wang. Cryo-Em Structures of Human RAD51 Recombinase Filaments During Catalysis of Dna-Strand Exchange Nat. Struct. Mol. Biol. V. 24 40 2017.
ISSN: ESSN 1545-9985
PubMed: 27941862
DOI: 10.1038/NSMB.3336