Magnesium in PDB 5h1c: Human RAD51 Post-Synaptic Complexes

The binding sites of Magnesium atom in the Human RAD51 Post-Synaptic Complexes (pdb code 5h1c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Human RAD51 Post-Synaptic Complexes, PDB code: 5h1c:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Human RAD51 Post-Synaptic Complexes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human RAD51 Post-Synaptic Complexes within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:30.0 occ:1.00 CG2 A:THR134 1.6 20.0 1.0 O1B A:ANP602 1.7 20.0 1.0 OD2 A:ASP222 2.5 20.0 1.0 O2G A:ANP602 2.6 20.0 1.0 CB A:THR134 2.9 20.0 1.0 OG1 A:THR134 3.1 20.0 1.0 PB A:ANP602 3.2 20.0 1.0 CG A:ASP222 3.3 20.0 1.0 OD1 A:ASP222 3.3 20.0 1.0 PG A:ANP602 3.9 20.0 1.0 O2B A:ANP602 4.0 20.0 1.0 CA A:THR134 4.0 37.0 1.0 O3A A:ANP602 4.0 20.0 1.0 N A:THR134 4.1 34.8 1.0 N3B A:ANP602 4.2 20.0 1.0 OG1 A:THR165 4.4 20.0 1.0 CE A:LYS133 4.4 20.0 1.0 CG A:LYS133 4.5 20.0 1.0 OE1 A:GLU163 4.6 20.0 1.0 NZ A:LYS133 4.6 20.0 1.0 CB A:ASP222 4.7 20.0 1.0 O3G A:ANP602 4.8 20.0 1.0 O1G A:ANP602 4.9 20.0 1.0 CD A:LYS133 5.0 20.0 1.0

Magnesium binding site 2 out of 3 in the Human RAD51 Post-Synaptic Complexes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human RAD51 Post-Synaptic Complexes within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:30.0 occ:1.00 CG2 B:THR134 1.6 20.0 1.0 O1B B:ANP602 1.7 20.0 1.0 OD2 B:ASP222 2.5 20.0 1.0 O2G B:ANP602 2.6 20.0 1.0 CB B:THR134 2.9 20.0 1.0 OG1 B:THR134 3.1 20.0 1.0 PB B:ANP602 3.2 20.0 1.0 CG B:ASP222 3.3 20.0 1.0 OD1 B:ASP222 3.3 20.0 1.0 PG B:ANP602 3.9 20.0 1.0 O2B B:ANP602 4.0 20.0 1.0 CA B:THR134 4.0 37.0 1.0 O3A B:ANP602 4.0 20.0 1.0 N B:THR134 4.1 34.8 1.0 N3B B:ANP602 4.2 20.0 1.0 OG1 B:THR165 4.4 20.0 1.0 CE B:LYS133 4.4 20.0 1.0 CG B:LYS133 4.5 20.0 1.0 OE1 B:GLU163 4.6 20.0 1.0 NZ B:LYS133 4.6 20.0 1.0 CB B:ASP222 4.7 20.0 1.0 O3G B:ANP602 4.8 20.0 1.0 O1G B:ANP602 4.9 20.0 1.0 CD B:LYS133 5.0 20.0 1.0

Magnesium binding site 3 out of 3 in the Human RAD51 Post-Synaptic Complexes


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human RAD51 Post-Synaptic Complexes within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:30.0 occ:1.00 CG2 C:THR134 1.6 20.0 1.0 O1B C:ANP401 1.7 20.0 1.0 OD2 C:ASP222 2.5 20.0 1.0 O2G C:ANP401 2.6 20.0 1.0 CB C:THR134 2.9 20.0 1.0 OG1 C:THR134 3.1 20.0 1.0 PB C:ANP401 3.2 20.0 1.0 CG C:ASP222 3.3 20.0 1.0 OD1 C:ASP222 3.3 20.0 1.0 PG C:ANP401 3.9 20.0 1.0 O2B C:ANP401 4.0 20.0 1.0 CA C:THR134 4.0 37.0 1.0 O3A C:ANP401 4.0 20.0 1.0 N C:THR134 4.1 34.8 1.0 N3B C:ANP401 4.2 20.0 1.0 OG1 C:THR165 4.4 20.0 1.0 CE C:LYS133 4.4 20.0 1.0 CG C:LYS133 4.5 20.0 1.0 OE1 C:GLU163 4.6 20.0 1.0 NZ C:LYS133 4.6 20.0 1.0 CB C:ASP222 4.7 20.0 1.0 O3G C:ANP401 4.8 20.0 1.0 O1G C:ANP401 4.9 20.0 1.0 CD C:LYS133 5.0 20.0 1.0

J.Xu, L.Zhao, Y.Xu, W.Zhao, P.Sung, H.W.Wang. Cryo-Em Structures of Human RAD51 Recombinase Filaments During Catalysis of Dna-Strand Exchange Nat. Struct. Mol. Biol. V. 24 40 2017.
ISSN: ESSN 1545-9985
PubMed: 27941862
DOI: 10.1038/NSMB.3336