Atomistry » Magnesium » PDB 5h2f-5hi8 » 5h4d
Atomistry »
  Magnesium »
    PDB 5h2f-5hi8 »
      5h4d »

Magnesium in PDB 5h4d: Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride

Protein crystallography data

The structure of Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride, PDB code: 5h4d was solved by S.Zhang, L.Fu, J.Liu, B.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 77.32 / 3.21
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 114.560, 114.560, 123.404, 90.00, 90.00, 120.00
R / Rfree (%) 21.3 / 37.2

Other elements in 5h4d:

The structure of Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Iodine (I) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride (pdb code 5h4d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride, PDB code: 5h4d:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5h4d

Go back to Magnesium Binding Sites List in 5h4d
Magnesium binding site 1 out of 2 in the Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:2.0
occ:1.00
O A:ARG279 3.9 25.1 1.0
OD2 A:ASP271 4.2 38.9 1.0
CD A:PRO281 4.3 26.3 1.0
CG A:PRO281 4.4 26.3 1.0
CB A:PRO281 4.6 26.3 1.0
N A:PRO281 4.7 26.3 1.0
CG2 A:ILE268 4.8 31.8 1.0
C A:ARG279 4.9 25.3 1.0
CB A:ASP267 5.0 27.7 1.0

Magnesium binding site 2 out of 2 in 5h4d

Go back to Magnesium Binding Sites List in 5h4d
Magnesium binding site 2 out of 2 in the Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg404

b:2.0
occ:1.00
O H:ASP267 3.8 43.8 1.0
O H:ARG279 4.0 31.6 1.0
CD H:PRO281 4.0 28.4 1.0
CG H:PRO281 4.5 27.9 1.0
CG2 H:ILE268 4.6 51.4 1.0
OD2 H:ASP271 4.7 54.1 1.0
CG2 H:VAL287 4.7 22.2 1.0
N H:PRO281 4.8 28.2 1.0
C H:ASP267 4.8 44.1 1.0
CB H:PRO281 4.9 27.5 1.0

Reference:

S.Zhang, L.Fu, J.Liu, B.Liu. Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride To Be Published.
Page generated: Sun Sep 29 15:40:53 2024

Last articles

Na in 7Q78
Na in 7Q77
Na in 7Q76
Na in 7Q6Q
Na in 7Q75
Na in 7Q5F
Na in 7Q47
Na in 7Q3Z
Na in 7Q5E
Na in 7Q36
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy