Magnesium in PDB 5h4d: Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride

The structure of Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride, PDB code: 5h4d was solved by S.Zhang, L.Fu, J.Liu, B.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	77.32 / 3.21
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	114.560, 114.560, 123.404, 90.00, 90.00, 120.00
R / Rfree (%)	21.3 / 37.2

The structure of Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride also contains other interesting chemical elements:

Zinc	(Zn)	2 atoms
Iodine	(I)	4 atoms

The binding sites of Magnesium atom in the Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride (pdb code 5h4d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride, PDB code: 5h4d:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:2.0 occ:1.00 O A:ARG279 3.9 25.1 1.0 OD2 A:ASP271 4.2 38.9 1.0 CD A:PRO281 4.3 26.3 1.0 CG A:PRO281 4.4 26.3 1.0 CB A:PRO281 4.6 26.3 1.0 N A:PRO281 4.7 26.3 1.0 CG2 A:ILE268 4.8 31.8 1.0 C A:ARG279 4.9 25.3 1.0 CB A:ASP267 5.0 27.7 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg404 b:2.0 occ:1.00 O H:ASP267 3.8 43.8 1.0 O H:ARG279 4.0 31.6 1.0 CD H:PRO281 4.0 28.4 1.0 CG H:PRO281 4.5 27.9 1.0 CG2 H:ILE268 4.6 51.4 1.0 OD2 H:ASP271 4.7 54.1 1.0 CG2 H:VAL287 4.7 22.2 1.0 N H:PRO281 4.8 28.2 1.0 C H:ASP267 4.8 44.1 1.0 CB H:PRO281 4.9 27.5 1.0

S.Zhang, L.Fu, J.Liu, B.Liu. Crystal Structure of HSIRT3 in Complex with A Specific Agonist Amiodarone Hydrochloride To Be Published.