Magnesium in PDB 5h70: Crystal Structure of Adp Bound Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7

All present enzymatic activity of Crystal Structure of Adp Bound Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7:
2.7.4.9;

The structure of Crystal Structure of Adp Bound Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7, PDB code: 5h70 was solved by A.Biswas, J.Jeyakanthan, K.Sekar, S.Kuramitsu, S.Yokoyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.46 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	49.171, 63.799, 141.758, 90.00, 90.00, 90.00
R / Rfree (%)	23.3 / 30

The binding sites of Magnesium atom in the Crystal Structure of Adp Bound Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7 (pdb code 5h70). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Adp Bound Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7, PDB code: 5h70:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Adp Bound Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Adp Bound Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg303 b:55.0 occ:1.00 O B:HOH401 2.5 44.7 1.0 OG B:SER18 2.5 48.9 1.0 O B:HOH402 2.6 46.9 1.0 O3B B:ADP301 2.7 47.4 1.0 OD1 B:ASP92 3.4 52.4 1.0 OD2 B:ASP92 3.5 51.2 1.0 PB B:ADP301 3.8 55.7 1.0 CB B:SER18 3.8 56.2 1.0 CG B:ASP92 3.9 52.5 1.0 O1B B:ADP301 3.9 55.1 1.0 CE B:LYS17 4.0 47.3 1.0 N B:SER18 4.2 51.2 1.0 NZ B:LYS17 4.2 61.3 1.0 O2B B:ADP301 4.5 64.0 1.0 CA B:SER18 4.6 56.4 1.0 CB B:LYS17 4.6 43.0 1.0 OE2 B:GLU38 4.7 0.3 1.0 CD B:ARG93 4.8 47.7 0.5 NE B:ARG93 4.8 48.8 0.5 CG B:ARG93 4.8 48.6 0.5 O1A B:ADP301 4.9 45.0 1.0 CD B:LYS17 4.9 36.2 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Adp Bound Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Adp Bound Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg304 b:75.4 occ:1.00 O1B A:ADP301 2.2 77.4 1.0 OG A:SER18 2.2 0.1 1.0 O A:HOH403 2.7 66.5 1.0 OD1 A:ASP92 3.4 93.0 1.0 PB A:ADP301 3.4 85.5 1.0 CB A:SER18 3.4 0.3 1.0 O3B A:ADP301 3.6 98.7 1.0 NH2 A:ARG93 3.9 75.0 0.5 NZ A:LYS17 3.9 80.0 1.0 OD2 A:ASP92 4.0 1.0 1.0 CG A:ASP92 4.1 93.2 1.0 N A:SER18 4.2 96.1 1.0 O1A A:ADP301 4.2 0.8 1.0 CA A:SER18 4.4 98.1 1.0 O2B A:ADP301 4.4 64.7 1.0 O3A A:ADP301 4.5 98.2 1.0 NE A:ARG93 4.7 77.0 0.5 CZ A:ARG93 4.8 78.0 0.5 CB A:LYS17 4.8 78.7 1.0 CE A:LYS17 4.8 75.0 1.0 PA A:ADP301 5.0 91.4 1.0

A.Biswas, J.Jeyakanthan, K.Sekar, S.Kuramitsu, S.Yokoyama. Crystal Structure of Adp Bound Dtmp Kinase (ST1543) From Sulfolobus Tokodaii STRAIN7 To Be Published.