Magnesium in PDB 5h8z: Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
Protein crystallography data
The structure of Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum, PDB code: 5h8z
was solved by
X.Lu,
M.J.Cuneo,
D.A.A.Myles,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.84 /
1.80
|
Space group
|
P 43 3 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
168.358,
168.358,
168.358,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15.9 /
18.9
|
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Magnesium atom in the Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
(pdb code 5h8z). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the
Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum, PDB code: 5h8z:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 16 in 5h8z
Go back to
Magnesium Binding Sites List in 5h8z
Magnesium binding site 1 out
of 16 in the Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg401
b:21.9
occ:1.00
|
MG
|
A:BCL401
|
0.0
|
21.9
|
1.0
|
ND
|
A:BCL401
|
2.0
|
19.2
|
1.0
|
NB
|
A:BCL401
|
2.1
|
20.3
|
1.0
|
NC
|
A:BCL401
|
2.1
|
20.6
|
1.0
|
NA
|
A:BCL401
|
2.2
|
19.3
|
1.0
|
NE2
|
A:HIS111
|
2.4
|
21.7
|
1.0
|
C4D
|
A:BCL401
|
3.0
|
19.5
|
1.0
|
C1B
|
A:BCL401
|
3.1
|
20.9
|
1.0
|
C4B
|
A:BCL401
|
3.1
|
19.3
|
1.0
|
C1C
|
A:BCL401
|
3.1
|
17.8
|
1.0
|
C1D
|
A:BCL401
|
3.2
|
19.4
|
1.0
|
C4A
|
A:BCL401
|
3.2
|
21.0
|
1.0
|
C4C
|
A:BCL401
|
3.2
|
21.1
|
1.0
|
C1A
|
A:BCL401
|
3.2
|
20.2
|
1.0
|
CD2
|
A:HIS111
|
3.3
|
23.0
|
1.0
|
CE1
|
A:HIS111
|
3.4
|
25.2
|
1.0
|
CHB
|
A:BCL401
|
3.4
|
19.3
|
1.0
|
CHC
|
A:BCL401
|
3.4
|
21.1
|
1.0
|
CHA
|
A:BCL401
|
3.5
|
18.3
|
1.0
|
CHD
|
A:BCL401
|
3.5
|
18.6
|
1.0
|
C2
|
A:BCL401
|
3.8
|
18.0
|
1.0
|
C3
|
A:BCL401
|
3.9
|
16.4
|
1.0
|
C1
|
A:BCL401
|
4.1
|
21.4
|
1.0
|
C3D
|
A:BCL401
|
4.2
|
18.6
|
1.0
|
C2B
|
A:BCL401
|
4.3
|
22.2
|
1.0
|
C3B
|
A:BCL401
|
4.3
|
21.6
|
1.0
|
C2D
|
A:BCL401
|
4.3
|
18.8
|
1.0
|
C4
|
A:BCL401
|
4.4
|
17.9
|
1.0
|
C5
|
A:BCL401
|
4.4
|
20.5
|
1.0
|
C2C
|
A:BCL401
|
4.4
|
18.8
|
1.0
|
CG
|
A:HIS111
|
4.4
|
21.0
|
1.0
|
O2A
|
A:BCL401
|
4.5
|
20.9
|
1.0
|
ND1
|
A:HIS111
|
4.5
|
18.4
|
1.0
|
C3C
|
A:BCL401
|
4.5
|
22.4
|
1.0
|
C3A
|
A:BCL401
|
4.5
|
19.1
|
1.0
|
C2A
|
A:BCL401
|
4.5
|
20.1
|
1.0
|
CG1
|
A:VAL104
|
4.7
|
16.9
|
0.8
|
C6
|
A:BCL401
|
4.9
|
21.1
|
1.0
|
CBD
|
A:BCL401
|
4.9
|
20.1
|
1.0
|
|
Magnesium binding site 2 out
of 16 in 5h8z
Go back to
Magnesium Binding Sites List in 5h8z
Magnesium binding site 2 out
of 16 in the Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:16.2
occ:1.00
|
MG
|
A:BCL402
|
0.0
|
16.2
|
1.0
|
ND
|
A:BCL402
|
2.0
|
16.2
|
1.0
|
NB
|
A:BCL402
|
2.0
|
15.2
|
1.0
|
NC
|
A:BCL402
|
2.1
|
16.2
|
1.0
|
NA
|
A:BCL402
|
2.2
|
16.0
|
1.0
|
O
|
A:HOH705
|
2.2
|
17.7
|
1.0
|
C4D
|
A:BCL402
|
3.0
|
18.4
|
1.0
|
C4B
|
A:BCL402
|
3.1
|
15.9
|
1.0
|
C1B
|
A:BCL402
|
3.1
|
17.9
|
1.0
|
C1C
|
A:BCL402
|
3.1
|
15.5
|
1.0
|
C4A
|
A:BCL402
|
3.1
|
18.1
|
1.0
|
C4C
|
A:BCL402
|
3.2
|
12.1
|
1.0
|
C1D
|
A:BCL402
|
3.2
|
14.0
|
1.0
|
C1A
|
A:BCL402
|
3.2
|
16.6
|
1.0
|
CHC
|
A:BCL402
|
3.4
|
18.3
|
1.0
|
CHB
|
A:BCL402
|
3.4
|
17.9
|
1.0
|
CHA
|
A:BCL402
|
3.4
|
14.3
|
1.0
|
CHD
|
A:BCL402
|
3.5
|
13.4
|
1.0
|
C12
|
A:BCL407
|
3.9
|
25.2
|
1.0
|
O
|
A:HOH508
|
4.0
|
23.4
|
1.0
|
O
|
A:HOH750
|
4.1
|
23.7
|
1.0
|
C3D
|
A:BCL402
|
4.2
|
16.9
|
1.0
|
C2B
|
A:BCL402
|
4.3
|
18.5
|
1.0
|
C3B
|
A:BCL402
|
4.3
|
18.7
|
1.0
|
C2D
|
A:BCL402
|
4.3
|
14.8
|
1.0
|
ND2
|
A:ASN80
|
4.3
|
16.6
|
1.0
|
C11
|
A:BCL407
|
4.4
|
22.9
|
1.0
|
C3C
|
A:BCL402
|
4.5
|
17.7
|
1.0
|
C2C
|
A:BCL402
|
4.5
|
14.8
|
1.0
|
C3A
|
A:BCL402
|
4.5
|
19.3
|
1.0
|
C2A
|
A:BCL402
|
4.5
|
18.9
|
1.0
|
C10
|
A:BCL407
|
4.5
|
21.6
|
1.0
|
CG2
|
A:VAL75
|
4.6
|
16.7
|
1.0
|
C15
|
A:BCL407
|
4.8
|
24.3
|
1.0
|
C13
|
A:BCL407
|
4.9
|
23.2
|
1.0
|
CBD
|
A:BCL402
|
4.9
|
16.0
|
1.0
|
CG
|
A:ASN80
|
4.9
|
18.8
|
1.0
|
|
Magnesium binding site 3 out
of 16 in 5h8z
Go back to
Magnesium Binding Sites List in 5h8z
Magnesium binding site 3 out
of 16 in the Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg403
b:14.9
occ:1.00
|
MG
|
A:BCL403
|
0.0
|
14.9
|
1.0
|
ND
|
A:BCL403
|
2.0
|
13.2
|
1.0
|
NB
|
A:BCL403
|
2.1
|
15.2
|
1.0
|
NC
|
A:BCL403
|
2.1
|
13.7
|
1.0
|
NA
|
A:BCL403
|
2.2
|
13.9
|
1.0
|
NE2
|
A:HIS298
|
2.3
|
15.3
|
1.0
|
C4D
|
A:BCL403
|
3.0
|
12.2
|
1.0
|
C1B
|
A:BCL403
|
3.1
|
14.6
|
1.0
|
C4B
|
A:BCL403
|
3.1
|
14.2
|
1.0
|
C1C
|
A:BCL403
|
3.1
|
14.3
|
1.0
|
C1D
|
A:BCL403
|
3.1
|
15.2
|
1.0
|
C4A
|
A:BCL403
|
3.2
|
14.7
|
1.0
|
C4C
|
A:BCL403
|
3.2
|
11.6
|
1.0
|
CE1
|
A:HIS298
|
3.2
|
15.4
|
1.0
|
C1A
|
A:BCL403
|
3.2
|
14.1
|
1.0
|
CD2
|
A:HIS298
|
3.3
|
13.8
|
1.0
|
CHC
|
A:BCL403
|
3.4
|
14.0
|
1.0
|
CHB
|
A:BCL403
|
3.4
|
13.7
|
1.0
|
CHA
|
A:BCL403
|
3.4
|
13.9
|
1.0
|
CHD
|
A:BCL403
|
3.5
|
13.9
|
1.0
|
C3D
|
A:BCL403
|
4.2
|
11.9
|
1.0
|
C2B
|
A:BCL403
|
4.3
|
14.8
|
1.0
|
C2D
|
A:BCL403
|
4.3
|
13.9
|
1.0
|
C3B
|
A:BCL403
|
4.3
|
13.6
|
1.0
|
ND1
|
A:HIS298
|
4.4
|
14.6
|
1.0
|
C2C
|
A:BCL403
|
4.4
|
11.7
|
1.0
|
CG
|
A:HIS298
|
4.4
|
12.6
|
1.0
|
C3C
|
A:BCL403
|
4.5
|
12.2
|
1.0
|
C3A
|
A:BCL403
|
4.5
|
15.6
|
1.0
|
C2A
|
A:BCL403
|
4.5
|
14.0
|
1.0
|
CBC
|
A:BCL404
|
4.6
|
12.4
|
1.0
|
CD1
|
A:ILE265
|
4.8
|
18.4
|
1.0
|
CBD
|
A:BCL403
|
4.9
|
15.5
|
1.0
|
CG2
|
A:VAL301
|
5.0
|
13.5
|
1.0
|
|
Magnesium binding site 4 out
of 16 in 5h8z
Go back to
Magnesium Binding Sites List in 5h8z
Magnesium binding site 4 out
of 16 in the Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg404
b:15.5
occ:1.00
|
MG
|
A:BCL404
|
0.0
|
15.5
|
1.0
|
ND
|
A:BCL404
|
2.0
|
15.2
|
1.0
|
NB
|
A:BCL404
|
2.0
|
15.7
|
1.0
|
NC
|
A:BCL404
|
2.1
|
13.1
|
1.0
|
NA
|
A:BCL404
|
2.2
|
14.4
|
1.0
|
NE2
|
A:HIS290
|
2.3
|
14.7
|
1.0
|
C4D
|
A:BCL404
|
3.0
|
15.2
|
1.0
|
C1B
|
A:BCL404
|
3.1
|
15.4
|
1.0
|
C4B
|
A:BCL404
|
3.1
|
14.9
|
1.0
|
CE1
|
A:HIS290
|
3.1
|
14.6
|
1.0
|
C4A
|
A:BCL404
|
3.1
|
14.7
|
1.0
|
C1C
|
A:BCL404
|
3.1
|
13.3
|
1.0
|
C1D
|
A:BCL404
|
3.1
|
16.4
|
1.0
|
C4C
|
A:BCL404
|
3.2
|
13.7
|
1.0
|
C1A
|
A:BCL404
|
3.2
|
13.9
|
1.0
|
CD2
|
A:HIS290
|
3.3
|
15.6
|
1.0
|
CHB
|
A:BCL404
|
3.3
|
15.9
|
1.0
|
CHC
|
A:BCL404
|
3.4
|
13.0
|
1.0
|
CHA
|
A:BCL404
|
3.5
|
15.5
|
1.0
|
CHD
|
A:BCL404
|
3.5
|
15.3
|
1.0
|
C4
|
A:BCL404
|
4.1
|
17.1
|
1.0
|
ND1
|
A:HIS290
|
4.2
|
14.5
|
1.0
|
C3D
|
A:BCL404
|
4.2
|
14.8
|
1.0
|
C2B
|
A:BCL404
|
4.3
|
13.2
|
1.0
|
C3B
|
A:BCL404
|
4.3
|
16.6
|
1.0
|
C2D
|
A:BCL404
|
4.3
|
13.9
|
1.0
|
CG
|
A:HIS290
|
4.3
|
13.2
|
1.0
|
C3A
|
A:BCL404
|
4.4
|
14.5
|
1.0
|
C2C
|
A:BCL404
|
4.4
|
10.5
|
1.0
|
C3C
|
A:BCL404
|
4.4
|
12.2
|
1.0
|
O2A
|
A:BCL404
|
4.5
|
18.4
|
1.0
|
C2A
|
A:BCL404
|
4.5
|
12.9
|
1.0
|
C3
|
A:BCL404
|
4.6
|
16.6
|
1.0
|
C1
|
A:BCL404
|
4.6
|
17.5
|
1.0
|
C2
|
A:BCL404
|
4.8
|
19.0
|
1.0
|
CBD
|
A:BCL404
|
5.0
|
14.6
|
1.0
|
CMA
|
A:BCL404
|
5.0
|
16.0
|
1.0
|
|
Magnesium binding site 5 out
of 16 in 5h8z
Go back to
Magnesium Binding Sites List in 5h8z
Magnesium binding site 5 out
of 16 in the Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg405
b:17.6
occ:1.00
|
MG
|
A:BCL405
|
0.0
|
17.6
|
1.0
|
ND
|
A:BCL405
|
2.0
|
15.0
|
1.0
|
NB
|
A:BCL405
|
2.1
|
17.1
|
1.0
|
NC
|
A:BCL405
|
2.2
|
15.7
|
1.0
|
O
|
A:LEU242
|
2.2
|
16.9
|
1.0
|
NA
|
A:BCL405
|
2.2
|
16.9
|
1.0
|
C4D
|
A:BCL405
|
3.0
|
16.1
|
1.0
|
C4B
|
A:BCL405
|
3.1
|
17.9
|
1.0
|
C1B
|
A:BCL405
|
3.1
|
18.9
|
1.0
|
C1C
|
A:BCL405
|
3.1
|
17.7
|
1.0
|
C1D
|
A:BCL405
|
3.1
|
16.7
|
1.0
|
C4A
|
A:BCL405
|
3.1
|
18.7
|
1.0
|
C4C
|
A:BCL405
|
3.2
|
17.2
|
1.0
|
C1A
|
A:BCL405
|
3.2
|
17.4
|
1.0
|
C
|
A:LEU242
|
3.3
|
17.9
|
1.0
|
CHC
|
A:BCL405
|
3.4
|
15.9
|
1.0
|
CHB
|
A:BCL405
|
3.4
|
16.5
|
1.0
|
CHA
|
A:BCL405
|
3.4
|
17.1
|
1.0
|
CHD
|
A:BCL405
|
3.5
|
17.4
|
1.0
|
CA
|
A:LEU242
|
3.9
|
15.0
|
1.0
|
CB
|
A:LEU242
|
4.0
|
13.4
|
1.0
|
C12
|
A:BCL406
|
4.1
|
24.8
|
1.0
|
C3D
|
A:BCL405
|
4.2
|
16.5
|
1.0
|
C3B
|
A:BCL405
|
4.3
|
18.5
|
1.0
|
C2B
|
A:BCL405
|
4.3
|
17.3
|
1.0
|
C2D
|
A:BCL405
|
4.3
|
14.2
|
1.0
|
CD1
|
A:LEU242
|
4.4
|
16.5
|
1.0
|
N
|
A:PHE243
|
4.4
|
18.7
|
1.0
|
C3A
|
A:BCL405
|
4.4
|
18.7
|
1.0
|
C2C
|
A:BCL405
|
4.5
|
16.8
|
1.0
|
C3C
|
A:BCL405
|
4.5
|
14.6
|
1.0
|
C2A
|
A:BCL405
|
4.5
|
17.3
|
1.0
|
C15
|
A:BCL406
|
4.7
|
25.0
|
1.0
|
CA
|
A:PHE243
|
4.7
|
18.2
|
1.0
|
CG
|
A:LEU242
|
4.9
|
18.3
|
1.0
|
C16
|
A:BCL406
|
4.9
|
31.6
|
1.0
|
CD
|
A:PRO244
|
4.9
|
21.1
|
1.0
|
C13
|
A:BCL406
|
4.9
|
25.7
|
1.0
|
CBD
|
A:BCL405
|
4.9
|
14.4
|
1.0
|
|
Magnesium binding site 6 out
of 16 in 5h8z
Go back to
Magnesium Binding Sites List in 5h8z
Magnesium binding site 6 out
of 16 in the Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg406
b:18.0
occ:1.00
|
MG
|
A:BCL406
|
0.0
|
18.0
|
1.0
|
ND
|
A:BCL406
|
2.0
|
16.9
|
1.0
|
NB
|
A:BCL406
|
2.1
|
18.0
|
1.0
|
NC
|
A:BCL406
|
2.2
|
15.7
|
1.0
|
NA
|
A:BCL406
|
2.2
|
16.8
|
1.0
|
NE2
|
A:HIS146
|
2.3
|
16.8
|
1.0
|
C4D
|
A:BCL406
|
3.0
|
18.2
|
0.1
|
C4D
|
A:BCL406
|
3.0
|
18.2
|
0.8
|
C4B
|
A:BCL406
|
3.1
|
19.3
|
1.0
|
C1B
|
A:BCL406
|
3.1
|
17.8
|
1.0
|
C1C
|
A:BCL406
|
3.1
|
16.6
|
1.0
|
C4A
|
A:BCL406
|
3.1
|
18.5
|
1.0
|
CD2
|
A:HIS146
|
3.2
|
18.9
|
1.0
|
C1D
|
A:BCL406
|
3.2
|
17.7
|
1.0
|
C4C
|
A:BCL406
|
3.2
|
15.5
|
1.0
|
C1A
|
A:BCL406
|
3.2
|
17.6
|
1.0
|
CE1
|
A:HIS146
|
3.3
|
16.6
|
1.0
|
CHC
|
A:BCL406
|
3.4
|
15.6
|
1.0
|
CHB
|
A:BCL406
|
3.4
|
17.8
|
1.0
|
CHA
|
A:BCL406
|
3.5
|
17.0
|
0.1
|
CHA
|
A:BCL406
|
3.5
|
16.9
|
0.8
|
CHD
|
A:BCL406
|
3.5
|
17.8
|
1.0
|
C3D
|
A:BCL406
|
4.2
|
19.1
|
0.1
|
C3D
|
A:BCL406
|
4.2
|
19.1
|
0.8
|
C2B
|
A:BCL406
|
4.3
|
18.4
|
1.0
|
C3B
|
A:BCL406
|
4.3
|
17.9
|
1.0
|
C2D
|
A:BCL406
|
4.3
|
19.4
|
1.0
|
CG
|
A:HIS146
|
4.4
|
19.1
|
1.0
|
ND1
|
A:HIS146
|
4.4
|
19.4
|
1.0
|
C3A
|
A:BCL406
|
4.4
|
16.8
|
1.0
|
C2C
|
A:BCL406
|
4.5
|
14.8
|
1.0
|
C2A
|
A:BCL406
|
4.5
|
16.2
|
1.0
|
C3C
|
A:BCL406
|
4.5
|
15.8
|
1.0
|
C20
|
A:BCL403
|
4.5
|
22.6
|
1.0
|
C17
|
A:BCL403
|
4.6
|
19.9
|
1.0
|
CG2
|
A:VAL119
|
4.9
|
18.3
|
1.0
|
CBD
|
A:BCL406
|
4.9
|
17.4
|
0.1
|
CBD
|
A:BCL406
|
5.0
|
17.2
|
0.8
|
|
Magnesium binding site 7 out
of 16 in 5h8z
Go back to
Magnesium Binding Sites List in 5h8z
Magnesium binding site 7 out
of 16 in the Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg407
b:14.9
occ:1.00
|
MG
|
A:BCL407
|
0.0
|
14.9
|
1.0
|
ND
|
A:BCL407
|
2.0
|
14.1
|
1.0
|
NB
|
A:BCL407
|
2.1
|
14.9
|
1.0
|
NC
|
A:BCL407
|
2.1
|
13.6
|
1.0
|
NA
|
A:BCL407
|
2.2
|
13.1
|
1.0
|
ND1
|
A:HIS297
|
2.2
|
15.6
|
1.0
|
C4D
|
A:BCL407
|
3.0
|
12.9
|
1.0
|
C1B
|
A:BCL407
|
3.1
|
14.5
|
1.0
|
C4B
|
A:BCL407
|
3.1
|
14.5
|
1.0
|
C1C
|
A:BCL407
|
3.1
|
13.9
|
1.0
|
CE1
|
A:HIS297
|
3.1
|
14.0
|
1.0
|
C1D
|
A:BCL407
|
3.2
|
14.8
|
1.0
|
C4A
|
A:BCL407
|
3.2
|
13.3
|
1.0
|
C4C
|
A:BCL407
|
3.2
|
13.4
|
1.0
|
C1A
|
A:BCL407
|
3.2
|
11.6
|
1.0
|
CG
|
A:HIS297
|
3.3
|
14.9
|
1.0
|
CHB
|
A:BCL407
|
3.4
|
12.1
|
1.0
|
CHC
|
A:BCL407
|
3.4
|
12.6
|
1.0
|
CHA
|
A:BCL407
|
3.5
|
14.0
|
1.0
|
CHD
|
A:BCL407
|
3.5
|
12.7
|
1.0
|
CB
|
A:HIS297
|
3.6
|
15.8
|
1.0
|
C4
|
A:BCL403
|
3.7
|
25.1
|
1.0
|
C3D
|
A:BCL407
|
4.2
|
14.5
|
1.0
|
C2B
|
A:BCL407
|
4.2
|
13.4
|
1.0
|
C3B
|
A:BCL407
|
4.3
|
13.5
|
1.0
|
NE2
|
A:HIS297
|
4.3
|
13.6
|
1.0
|
C2D
|
A:BCL407
|
4.3
|
14.4
|
1.0
|
CD2
|
A:HIS297
|
4.4
|
13.8
|
1.0
|
C2C
|
A:BCL407
|
4.4
|
16.5
|
1.0
|
C3C
|
A:BCL407
|
4.5
|
15.7
|
1.0
|
C3A
|
A:BCL407
|
4.5
|
15.4
|
1.0
|
C2A
|
A:BCL407
|
4.5
|
13.7
|
1.0
|
C3
|
A:BCL403
|
4.5
|
23.3
|
1.0
|
CG2
|
A:ILE293
|
4.6
|
13.3
|
1.0
|
C1
|
A:BCL403
|
4.9
|
18.3
|
1.0
|
CBD
|
A:BCL407
|
5.0
|
11.9
|
1.0
|
|
Magnesium binding site 8 out
of 16 in 5h8z
Go back to
Magnesium Binding Sites List in 5h8z
Magnesium binding site 8 out
of 16 in the Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg408
b:44.8
occ:0.74
|
MG
|
A:BCL408
|
0.0
|
44.8
|
0.7
|
ND
|
A:BCL408
|
2.0
|
31.2
|
0.7
|
NB
|
A:BCL408
|
2.1
|
32.5
|
0.7
|
NC
|
A:BCL408
|
2.1
|
32.7
|
0.7
|
NA
|
A:BCL408
|
2.2
|
37.9
|
0.7
|
O
|
A:TYR124
|
2.4
|
27.9
|
1.0
|
C4D
|
A:BCL408
|
3.0
|
27.2
|
0.7
|
C1B
|
A:BCL408
|
3.0
|
37.9
|
0.7
|
C4B
|
A:BCL408
|
3.0
|
29.1
|
0.7
|
C1C
|
A:BCL408
|
3.1
|
29.7
|
0.7
|
C4A
|
A:BCL408
|
3.1
|
39.1
|
0.7
|
C1D
|
A:BCL408
|
3.2
|
30.4
|
0.7
|
C4C
|
A:BCL408
|
3.2
|
31.0
|
0.7
|
C1A
|
A:BCL408
|
3.2
|
38.9
|
0.7
|
CHB
|
A:BCL408
|
3.4
|
40.8
|
0.7
|
CHC
|
A:BCL408
|
3.4
|
27.0
|
0.7
|
CHA
|
A:BCL408
|
3.5
|
31.5
|
0.7
|
CHD
|
A:BCL408
|
3.5
|
28.8
|
0.7
|
C
|
A:TYR124
|
3.6
|
24.4
|
1.0
|
CA
|
A:TYR125
|
4.1
|
23.3
|
1.0
|
C2B
|
A:BCL408
|
4.2
|
33.4
|
0.7
|
C3B
|
A:BCL408
|
4.2
|
29.9
|
0.7
|
C3D
|
A:BCL408
|
4.2
|
24.7
|
0.7
|
N
|
A:TYR125
|
4.3
|
22.0
|
1.0
|
C3A
|
A:BCL408
|
4.3
|
42.6
|
0.7
|
C2D
|
A:BCL408
|
4.3
|
25.8
|
0.7
|
C2C
|
A:BCL408
|
4.4
|
24.5
|
0.7
|
C3C
|
A:BCL408
|
4.4
|
27.3
|
0.7
|
C2A
|
A:BCL408
|
4.4
|
42.5
|
0.7
|
CA
|
A:TYR124
|
4.6
|
21.7
|
1.0
|
CB
|
A:TYR125
|
4.6
|
21.4
|
1.0
|
CMA
|
A:BCL408
|
4.7
|
47.7
|
0.7
|
CBD
|
A:BCL408
|
5.0
|
31.1
|
0.7
|
|
Magnesium binding site 9 out
of 16 in 5h8z
Go back to
Magnesium Binding Sites List in 5h8z
Magnesium binding site 9 out
of 16 in the Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg401
b:22.0
occ:1.00
|
MG
|
C:BCL401
|
0.0
|
22.0
|
1.0
|
ND
|
C:BCL401
|
2.0
|
18.9
|
1.0
|
NB
|
C:BCL401
|
2.1
|
22.6
|
1.0
|
NC
|
C:BCL401
|
2.1
|
21.5
|
1.0
|
NA
|
C:BCL401
|
2.2
|
20.1
|
1.0
|
NE2
|
C:HIS111
|
2.3
|
21.1
|
1.0
|
CE1
|
C:HIS111
|
3.0
|
22.4
|
1.0
|
C4D
|
C:BCL401
|
3.0
|
20.3
|
1.0
|
C1B
|
C:BCL401
|
3.1
|
23.4
|
1.0
|
C4B
|
C:BCL401
|
3.1
|
20.9
|
1.0
|
C1C
|
C:BCL401
|
3.1
|
19.3
|
1.0
|
C4A
|
C:BCL401
|
3.1
|
19.9
|
1.0
|
C1D
|
C:BCL401
|
3.2
|
20.1
|
1.0
|
C4C
|
C:BCL401
|
3.2
|
21.4
|
1.0
|
C1A
|
C:BCL401
|
3.2
|
21.3
|
1.0
|
CHB
|
C:BCL401
|
3.4
|
23.9
|
1.0
|
CHC
|
C:BCL401
|
3.4
|
20.1
|
1.0
|
CD2
|
C:HIS111
|
3.4
|
23.3
|
1.0
|
CHA
|
C:BCL401
|
3.5
|
20.8
|
1.0
|
CHD
|
C:BCL401
|
3.5
|
19.5
|
1.0
|
C2
|
C:BCL401
|
3.7
|
19.3
|
1.0
|
C3
|
C:BCL401
|
3.8
|
21.2
|
1.0
|
C1
|
C:BCL401
|
4.0
|
20.3
|
1.0
|
ND1
|
C:HIS111
|
4.2
|
21.7
|
1.0
|
C4
|
C:BCL401
|
4.2
|
20.4
|
1.0
|
C3D
|
C:BCL401
|
4.2
|
20.2
|
1.0
|
C5
|
C:BCL401
|
4.3
|
21.5
|
1.0
|
C2B
|
C:BCL401
|
4.3
|
21.4
|
1.0
|
C3B
|
C:BCL401
|
4.3
|
24.1
|
1.0
|
C2D
|
C:BCL401
|
4.3
|
20.9
|
1.0
|
CG
|
C:HIS111
|
4.4
|
22.7
|
1.0
|
C2C
|
C:BCL401
|
4.4
|
21.4
|
1.0
|
O2A
|
C:BCL401
|
4.5
|
21.6
|
1.0
|
C3A
|
C:BCL401
|
4.5
|
20.4
|
1.0
|
C3C
|
C:BCL401
|
4.5
|
18.3
|
1.0
|
C2A
|
C:BCL401
|
4.6
|
19.6
|
1.0
|
C6
|
C:BCL401
|
4.8
|
22.3
|
1.0
|
CG1
|
C:VAL104
|
4.8
|
22.6
|
1.0
|
CBD
|
C:BCL401
|
5.0
|
17.9
|
1.0
|
|
Magnesium binding site 10 out
of 16 in 5h8z
Go back to
Magnesium Binding Sites List in 5h8z
Magnesium binding site 10 out
of 16 in the Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Crystal Structure of the C49A C353A Mutant Fenna-Matthews-Olson Protein From Chlorobaculum Tepidum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg402
b:17.4
occ:1.00
|
MG
|
C:BCL402
|
0.0
|
17.4
|
1.0
|
ND
|
C:BCL402
|
2.0
|
15.2
|
1.0
|
NB
|
C:BCL402
|
2.0
|
16.1
|
1.0
|
NC
|
C:BCL402
|
2.1
|
16.0
|
1.0
|
NA
|
C:BCL402
|
2.2
|
15.5
|
1.0
|
O
|
C:HOH706
|
2.3
|
18.6
|
1.0
|
C4D
|
C:BCL402
|
3.0
|
15.3
|
1.0
|
C1B
|
C:BCL402
|
3.1
|
18.1
|
1.0
|
C4B
|
C:BCL402
|
3.1
|
19.3
|
1.0
|
C1C
|
C:BCL402
|
3.1
|
18.1
|
1.0
|
C1D
|
C:BCL402
|
3.2
|
14.9
|
1.0
|
C4A
|
C:BCL402
|
3.2
|
15.7
|
1.0
|
C4C
|
C:BCL402
|
3.2
|
15.1
|
1.0
|
C1A
|
C:BCL402
|
3.2
|
16.2
|
1.0
|
CHB
|
C:BCL402
|
3.4
|
16.8
|
1.0
|
CHC
|
C:BCL402
|
3.4
|
16.4
|
1.0
|
CHA
|
C:BCL402
|
3.4
|
16.5
|
1.0
|
CHD
|
C:BCL402
|
3.5
|
15.6
|
1.0
|
O
|
C:HOH529
|
4.0
|
22.6
|
1.0
|
C12
|
C:BCL407
|
4.0
|
25.0
|
1.0
|
O
|
C:HOH726
|
4.1
|
26.9
|
1.0
|
C3D
|
C:BCL402
|
4.2
|
15.8
|
1.0
|
C2B
|
C:BCL402
|
4.3
|
17.7
|
1.0
|
C3B
|
C:BCL402
|
4.3
|
17.4
|
1.0
|
C2D
|
C:BCL402
|
4.3
|
15.8
|
1.0
|
ND2
|
C:ASN80
|
4.3
|
20.1
|
1.0
|
C2C
|
C:BCL402
|
4.5
|
14.5
|
1.0
|
C3C
|
C:BCL402
|
4.5
|
16.8
|
1.0
|
C3A
|
C:BCL402
|
4.5
|
16.6
|
1.0
|
C2A
|
C:BCL402
|
4.5
|
17.2
|
1.0
|
C10
|
C:BCL407
|
4.5
|
21.9
|
1.0
|
C11
|
C:BCL407
|
4.6
|
22.3
|
1.0
|
CG2
|
C:VAL75
|
4.7
|
17.1
|
1.0
|
C15
|
C:BCL407
|
4.8
|
28.5
|
1.0
|
C13
|
C:BCL407
|
4.9
|
27.7
|
1.0
|
CBD
|
C:BCL402
|
5.0
|
15.7
|
1.0
|
|
Reference:
R.Saer,
G.S.Orf,
X.Lu,
H.Zhang,
M.J.Cuneo,
D.A.Myles,
R.E.Blankenship.
Perturbation of Bacteriochlorophyll Molecules in Fenna-Matthews-Olson Protein Complexes Through Mutagenesis of Cysteine Residues. Biochim.Biophys.Acta V.1857 1455 2016.
ISSN: ISSN 0006-3002
PubMed: 27114180
DOI: 10.1016/J.BBABIO.2016.04.007
Page generated: Sun Sep 29 15:43:40 2024
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