Atomistry » Magnesium » PDB 5h2f-5hi8 » 5hc8
Atomistry »
  Magnesium »
    PDB 5h2f-5hi8 »
      5hc8 »

Magnesium in PDB 5hc8: Crystal Structure of Lavandulyl Diphosphate Synthase From Lavandula X Intermedia in Complex with Dimethylallyl Diphosphate

Protein crystallography data

The structure of Crystal Structure of Lavandulyl Diphosphate Synthase From Lavandula X Intermedia in Complex with Dimethylallyl Diphosphate, PDB code: 5hc8 was solved by M.X.Liu, W.D.Liu, J.Gao, Y.Y.Zheng, C.C.Chen, R.T.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.87
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 54.211, 140.235, 78.702, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 21.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Lavandulyl Diphosphate Synthase From Lavandula X Intermedia in Complex with Dimethylallyl Diphosphate (pdb code 5hc8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Lavandulyl Diphosphate Synthase From Lavandula X Intermedia in Complex with Dimethylallyl Diphosphate, PDB code: 5hc8:

Magnesium binding site 1 out of 1 in 5hc8

Go back to Magnesium Binding Sites List in 5hc8
Magnesium binding site 1 out of 1 in the Crystal Structure of Lavandulyl Diphosphate Synthase From Lavandula X Intermedia in Complex with Dimethylallyl Diphosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Lavandulyl Diphosphate Synthase From Lavandula X Intermedia in Complex with Dimethylallyl Diphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:31.1
occ:1.00
O A:HOH513 2.0 27.3 1.0
O7 A:ISY405 2.1 31.6 1.0
S1 A:PIS402 2.1 45.5 1.0
OD1 A:ASP76 2.1 25.8 1.0
O2 A:PIS402 2.1 30.6 1.0
O A:HOH514 2.2 33.2 1.0
CG A:ASP76 3.1 26.6 1.0
P1 A:PIS402 3.2 32.2 1.0
P2 A:PIS402 3.4 30.5 1.0
OD2 A:ASP76 3.4 25.4 1.0
P3 A:ISY405 3.5 33.6 1.0
O5 A:PIS402 3.5 31.5 1.0
O1 A:PIS402 3.6 31.1 1.0
O A:HOH501 3.6 34.7 1.0
O4 A:PIS402 3.9 29.2 1.0
O4 A:ISY405 3.9 36.3 1.0
O A:HOH509 4.0 39.5 1.0
O A:HOH562 4.0 33.2 1.0
S9 A:ISY405 4.0 34.3 1.0
NH2 A:ARG127 4.1 32.1 1.0
O A:HOH531 4.3 38.4 1.0
CB A:ASP76 4.4 26.7 1.0
N A:GLY77 4.4 28.4 1.0
O2 A:ISY405 4.4 34.7 1.0
O A:HOH546 4.5 42.7 1.0
O3 A:PIS402 4.6 31.7 1.0
O A:HOH595 4.6 43.9 1.0
O8 A:ISY405 4.6 33.9 1.0
P1 A:ISY405 4.6 31.3 1.0
CA A:ASP76 4.7 23.9 1.0
O6 A:ISY405 4.7 33.5 1.0
CAA A:61G403 4.8 44.9 1.0
O6 A:PIS402 4.8 33.8 1.0

Reference:

M.X.Liu, C.C.Chen, L.Chen, X.S.Xiao, Y.Y.Zheng, J.W.Huang, W.D.Liu, T.P.Ko, Y.S.Cheng, X.X.Feng, E.Oldfield, R.T.Guo, Y.H.Ma. Structure and Function of A "Head-to-Middle" Prenyltransferase: Lavandulyl Diphosphate Synthase Angew.Chem.Int.Ed.Engl. V. 55 4721 2016.
ISSN: ESSN 1521-3773
PubMed: 26922900
DOI: 10.1002/ANIE.201600656
Page generated: Sun Sep 29 15:46:09 2024

Last articles

Na in 7Q78
Na in 7Q77
Na in 7Q76
Na in 7Q6Q
Na in 7Q75
Na in 7Q5F
Na in 7Q47
Na in 7Q3Z
Na in 7Q5E
Na in 7Q36
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy