Atomistry » Magnesium » PDB 5h2f-5hi8 » 5hev
Atomistry »
  Magnesium »
    PDB 5h2f-5hi8 »
      5hev »

Magnesium in PDB 5hev: Crystal Structure of the Beryllofluoride-Activated Liar From Enterococcus Faecium

Protein crystallography data

The structure of Crystal Structure of the Beryllofluoride-Activated Liar From Enterococcus Faecium, PDB code: 5hev was solved by M.Davlieva, Y.Shamoo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.02 / 3.19
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 68.032, 68.032, 276.949, 90.00, 90.00, 120.00
R / Rfree (%) 21.9 / 27

Other elements in 5hev:

The structure of Crystal Structure of the Beryllofluoride-Activated Liar From Enterococcus Faecium also contains other interesting chemical elements:

Fluorine (F) 12 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Beryllofluoride-Activated Liar From Enterococcus Faecium (pdb code 5hev). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of the Beryllofluoride-Activated Liar From Enterococcus Faecium, PDB code: 5hev:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 5hev

Go back to Magnesium Binding Sites List in 5hev
Magnesium binding site 1 out of 4 in the Crystal Structure of the Beryllofluoride-Activated Liar From Enterococcus Faecium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Beryllofluoride-Activated Liar From Enterococcus Faecium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:29.2
occ:1.00
OD2 A:ASP54 1.9 40.5 1.0
F1 A:BEF302 1.9 40.1 1.0
O A:VAL56 2.0 28.5 1.0
OD1 A:ASP9 2.0 47.9 1.0
CG A:ASP9 3.0 39.6 1.0
CG A:ASP54 3.0 31.7 1.0
BE A:BEF302 3.2 32.6 1.0
C A:VAL56 3.2 30.0 1.0
OD2 A:ASP9 3.3 49.9 1.0
OD1 A:ASP8 3.3 36.8 1.0
OD1 A:ASP54 3.5 34.4 1.0
CG A:MET57 3.7 33.3 1.0
F3 A:BEF302 4.0 34.3 1.0
N A:MET57 4.1 27.2 1.0
CB A:ASP54 4.2 30.0 1.0
CA A:VAL56 4.2 35.6 1.0
CA A:MET57 4.2 32.9 1.0
N A:ASP9 4.3 39.6 1.0
CB A:ASP9 4.3 34.7 1.0
N A:VAL56 4.4 25.4 1.0
CG A:ASP8 4.4 28.9 1.0
CB A:VAL56 4.4 26.7 1.0
F2 A:BEF302 4.4 27.9 1.0
CB A:MET57 4.6 47.9 1.0
NZ A:LYS104 4.7 38.2 1.0
CG1 A:VAL56 4.7 13.0 1.0
CA A:ASP9 4.8 42.3 1.0
OD2 A:ASP8 4.9 39.6 1.0
CD2 A:HIS10 4.9 50.8 1.0
NE2 A:HIS10 4.9 46.3 1.0
N A:HIS10 5.0 33.0 1.0

Magnesium binding site 2 out of 4 in 5hev

Go back to Magnesium Binding Sites List in 5hev
Magnesium binding site 2 out of 4 in the Crystal Structure of the Beryllofluoride-Activated Liar From Enterococcus Faecium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Beryllofluoride-Activated Liar From Enterococcus Faecium within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg301

b:40.2
occ:1.00
OD2 F:ASP54 1.8 44.4 1.0
F3 F:BEF302 1.9 36.1 1.0
OD1 F:ASP9 1.9 48.1 1.0
O F:VAL56 2.0 48.7 1.0
CG F:ASP9 2.8 39.6 1.0
BE F:BEF302 2.8 53.3 1.0
CG F:ASP54 2.9 48.6 1.0
OD1 F:ASP8 3.1 46.5 1.0
OD2 F:ASP9 3.2 34.9 1.0
C F:VAL56 3.3 40.3 1.0
CG F:MET57 3.6 35.4 1.0
F1 F:BEF302 3.7 46.5 1.0
OD1 F:ASP54 3.7 56.4 1.0
N F:ASP9 3.9 37.9 1.0
CB F:ASP54 3.9 40.3 1.0
F2 F:BEF302 4.0 51.1 1.0
CB F:ASP9 4.0 35.4 1.0
N F:MET57 4.2 45.5 1.0
CA F:VAL56 4.2 35.5 1.0
CA F:MET57 4.3 47.8 1.0
CG F:ASP8 4.3 47.6 1.0
N F:VAL56 4.4 35.0 1.0
CB F:VAL56 4.4 28.9 1.0
CA F:ASP9 4.4 31.0 1.0
NE2 F:HIS10 4.5 51.5 1.0
CB F:MET57 4.5 40.1 1.0
CD2 F:HIS10 4.5 48.8 1.0
CE1 F:HIS10 4.8 50.4 1.0
C F:ASP9 4.9 44.5 1.0
CG F:HIS10 4.9 43.2 1.0
CG1 F:VAL56 4.9 47.3 1.0
N F:HIS10 4.9 47.2 1.0
OD2 F:ASP8 4.9 51.1 1.0
SD F:MET57 5.0 41.0 1.0
C F:ASP8 5.0 35.9 1.0
ND1 F:HIS10 5.0 49.4 1.0

Magnesium binding site 3 out of 4 in 5hev

Go back to Magnesium Binding Sites List in 5hev
Magnesium binding site 3 out of 4 in the Crystal Structure of the Beryllofluoride-Activated Liar From Enterococcus Faecium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the Beryllofluoride-Activated Liar From Enterococcus Faecium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:40.6
occ:1.00
OD2 B:ASP54 1.9 49.5 1.0
F1 B:BEF302 1.9 51.1 1.0
OD1 B:ASP9 2.0 47.9 1.0
O B:VAL56 2.0 44.8 1.0
CG B:ASP9 2.7 53.1 1.0
OD2 B:ASP9 2.8 53.5 1.0
CG B:ASP54 3.0 46.1 1.0
BE B:BEF302 3.0 45.0 1.0
CG2 B:VAL56 3.2 44.9 1.0
C B:VAL56 3.2 35.3 1.0
OD1 B:ASP54 3.6 43.8 1.0
OD1 B:ASP8 3.7 47.6 1.0
F2 B:BEF302 3.8 31.4 1.0
CA B:VAL56 3.9 42.5 1.0
N B:VAL56 4.0 35.6 1.0
CB B:VAL56 4.0 34.4 1.0
CB B:ASP9 4.1 38.8 1.0
CB B:ASP54 4.2 38.6 1.0
CG B:MET57 4.2 40.6 1.0
N B:MET57 4.3 38.5 1.0
F3 B:BEF302 4.3 41.4 1.0
N B:ASP9 4.5 46.9 1.0
CA B:MET57 4.6 44.0 1.0
NE2 B:HIS10 4.6 41.2 1.0
CD2 B:HIS10 4.7 42.3 1.0
CA B:ASP9 4.9 36.3 1.0
CG B:ASP8 4.9 42.0 1.0
C B:LEU55 5.0 33.9 1.0

Magnesium binding site 4 out of 4 in 5hev

Go back to Magnesium Binding Sites List in 5hev
Magnesium binding site 4 out of 4 in the Crystal Structure of the Beryllofluoride-Activated Liar From Enterococcus Faecium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of the Beryllofluoride-Activated Liar From Enterococcus Faecium within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg301

b:36.7
occ:1.00
OD2 C:ASP54 1.7 51.4 1.0
F2 C:BEF302 1.8 34.6 1.0
OD1 C:ASP9 1.8 51.0 1.0
O C:VAL56 2.1 54.6 1.0
CG C:ASP9 2.8 44.0 1.0
BE C:BEF302 2.9 49.3 1.0
OD1 C:ASP8 2.9 43.8 1.0
CG C:ASP54 3.0 48.7 1.0
C C:VAL56 3.3 45.3 1.0
OD2 C:ASP9 3.3 40.5 1.0
OD1 C:ASP54 3.7 51.6 1.0
CG C:MET57 3.9 39.4 1.0
N C:ASP9 3.9 37.4 1.0
F1 C:BEF302 3.9 59.1 1.0
F3 C:BEF302 3.9 52.3 1.0
CB C:ASP54 4.0 39.7 1.0
CB C:ASP9 4.0 34.6 1.0
CG C:ASP8 4.1 43.0 1.0
N C:MET57 4.2 43.2 1.0
CA C:VAL56 4.2 33.3 1.0
CA C:MET57 4.3 38.6 1.0
CB C:VAL56 4.3 25.5 1.0
N C:VAL56 4.4 33.5 1.0
CA C:ASP9 4.5 34.0 1.0
NE2 C:HIS10 4.5 43.2 1.0
CD2 C:HIS10 4.6 37.3 1.0
OD2 C:ASP8 4.6 50.3 1.0
CB C:MET57 4.7 44.6 1.0
CE1 C:HIS10 4.7 48.9 1.0
CG C:HIS10 4.8 35.0 1.0
CG1 C:VAL56 4.8 21.7 1.0
ND1 C:HIS10 4.9 48.9 1.0
C C:ASP9 4.9 36.7 1.0
N C:HIS10 4.9 41.1 1.0
NZ C:LYS104 4.9 54.9 1.0
C C:ASP8 4.9 39.9 1.0
CA C:ASP8 5.0 43.1 1.0

Reference:

M.Davlieva, A.Tovar-Yanez, K.Debruler, P.G.Leonard, M.R.Zianni, C.A.Arias, Y.Shamoo. An Adaptive Mutation in Enterococcus Faecium Liar Associated with Antimicrobial Peptide Resistance Mimics Phosphorylation and Stabilizes Liar in An Activated State. J.Mol.Biol. V. 428 4503 2016.
ISSN: ISSN 0022-2836
PubMed: 27670715
DOI: 10.1016/J.JMB.2016.09.016
Page generated: Sun Sep 29 15:49:15 2024

Last articles

Na in 6BQ9
Na in 6BWI
Na in 6C02
Na in 6C01
Na in 6BG4
Na in 6C0L
Na in 6BXR
Na in 6BZX
Na in 6BZ2
Na in 6BX5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy