Magnesium in PDB 5hny: Structural Basis of Backwards Motion in Kinesin-14: Plus-End Directed NKN669 in the Amppnp State

The binding sites of Magnesium atom in the Structural Basis of Backwards Motion in Kinesin-14: Plus-End Directed NKN669 in the Amppnp State (pdb code 5hny). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structural Basis of Backwards Motion in Kinesin-14: Plus-End Directed NKN669 in the Amppnp State, PDB code: 5hny:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structural Basis of Backwards Motion in Kinesin-14: Plus-End Directed NKN669 in the Amppnp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural Basis of Backwards Motion in Kinesin-14: Plus-End Directed NKN669 in the Amppnp State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:18.6 occ:1.00 O1G A:GTP500 2.4 28.7 1.0 O1B A:GTP500 3.2 41.2 1.0 CB A:GLN11 3.2 23.6 1.0 OD1 A:ASP69 3.3 33.2 1.0 OE2 A:GLU71 3.5 47.9 1.0 N A:GLN11 3.6 25.1 1.0 PG A:GTP500 3.7 30.0 1.0 OD2 A:ASP69 3.7 31.7 1.0 O3B A:GTP500 3.7 35.2 1.0 PB A:GTP500 3.8 41.4 1.0 CG A:ASP69 3.9 34.8 1.0 CA A:GLN11 3.9 23.8 1.0 O3A A:GTP500 4.1 39.2 1.0 CB A:GLU71 4.1 46.4 1.0 O2A A:GTP500 4.4 44.5 1.0 CB A:ALA99 4.4 35.5 1.0 CG2 A:VAL74 4.4 61.8 1.0 CG A:GLN11 4.5 24.7 1.0 O2G A:GTP500 4.5 35.0 1.0 CD A:GLU71 4.5 48.7 1.0 CD A:GLN11 4.6 29.2 1.0 OD1 B:ASN249 4.6 37.8 1.0 OG1 A:THR145 4.8 27.9 1.0 C A:GLY10 4.8 28.3 1.0 OE1 A:GLN11 4.8 33.8 1.0 PA A:GTP500 4.8 41.3 1.0 O3G A:GTP500 4.9 32.1 1.0 CG A:GLU71 4.9 49.1 1.0 O B:ASN249 4.9 40.4 1.0 CB A:THR145 5.0 23.2 1.0

Magnesium binding site 2 out of 2 in the Structural Basis of Backwards Motion in Kinesin-14: Plus-End Directed NKN669 in the Amppnp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structural Basis of Backwards Motion in Kinesin-14: Plus-End Directed NKN669 in the Amppnp State within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg401 b:0.0 occ:1.00 O2G K:ANP402 2.3 0.0 1.0 O1B K:ANP402 2.4 0.0 1.0 CD2 K:HIS216 2.7 0.0 1.0 OG1 K:THR108 2.7 0.0 1.0 PB K:ANP402 3.3 0.0 1.0 NE2 K:HIS216 3.5 0.0 1.0 PG K:ANP402 3.5 0.0 1.0 N3B K:ANP402 3.5 0.0 1.0 CB K:LYS107 3.7 0.0 1.0 N K:THR108 3.8 0.0 1.0 CG K:HIS216 3.9 0.0 1.0 CB K:THR108 4.0 0.0 1.0 O3A K:ANP402 4.2 0.0 1.0 O K:HIS216 4.2 0.0 1.0 CE K:LYS107 4.3 0.0 1.0 CA K:THR108 4.3 0.0 1.0 PA K:ANP402 4.3 0.0 1.0 O3G K:ANP402 4.3 0.0 1.0 CB K:HIS216 4.5 0.0 1.0 O1G K:ANP402 4.5 0.0 1.0 C K:LYS107 4.5 0.0 1.0 CA K:LYS107 4.6 0.0 1.0 CE1 K:HIS216 4.7 0.0 1.0 O1A K:ANP402 4.7 0.0 1.0 O2B K:ANP402 4.7 0.0 1.0 OG K:SER218 4.8 0.0 1.0 CG K:LYS107 4.9 0.0 1.0 ND1 K:HIS216 4.9 0.0 1.0 N K:LYS107 4.9 0.0 1.0

M.Yamagishi, H.Shigematsu, T.Yokoyama, M.Kikkawa, M.Sugawa, M.Aoki, M.Shirouzu, J.Yajima, R.Nitta. Structural Basis of Backwards Motion in Kinesin-1-Kinesin-14 Chimera: Implication For Kinesin-14 Motility Structure V. 24 1322 2016.
ISSN: ISSN 0969-2126
PubMed: 27452403
DOI: 10.1016/J.STR.2016.05.021