Magnesium in PDB 5hph: Structure of TRAP1 Fragment

The structure of Structure of TRAP1 Fragment, PDB code: 5hph was solved by N.Sung, C.Chang, S.Lee, F.T.F.Tsai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.76 / 2.43
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	93.437, 104.946, 156.909, 90.00, 90.00, 90.00
R / Rfree (%)	19.5 / 23.8

The binding sites of Magnesium atom in the Structure of TRAP1 Fragment (pdb code 5hph). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of TRAP1 Fragment, PDB code: 5hph:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of TRAP1 Fragment


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of TRAP1 Fragment within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:58.8 occ:1.00 OD1 A:ASN119 2.0 58.4 1.0 O A:HOH912 2.1 57.8 1.0 O2G A:ANP801 2.2 49.3 1.0 O2A A:ANP801 2.3 51.2 1.0 O2B A:ANP801 2.5 47.8 1.0 CG A:ASN119 2.7 49.7 1.0 ND2 A:ASN119 3.0 52.5 1.0 PG A:ANP801 3.6 54.9 1.0 PA A:ANP801 3.7 54.7 1.0 PB A:ANP801 3.7 50.3 1.0 O A:GLU115 3.8 55.9 1.0 OE2 A:GLU115 3.9 61.5 1.0 O3A A:ANP801 4.1 56.7 1.0 CB A:ASN119 4.1 44.1 1.0 N3B A:ANP801 4.2 58.6 1.0 O A:HOH905 4.3 52.4 1.0 N A:ASN119 4.3 51.5 1.0 O1G A:ANP801 4.4 55.3 1.0 O5' A:ANP801 4.4 58.1 1.0 CA A:GLY204 4.4 47.7 1.0 CA A:ASN119 4.4 49.5 1.0 O3G A:ANP801 4.6 55.7 1.0 N A:PHE205 4.7 44.7 1.0 C A:GLY204 4.7 51.2 1.0 C A:GLU115 4.7 54.5 1.0 CB A:SER118 4.8 50.0 1.0 N A:GLY204 4.8 57.3 1.0 O A:HOH913 4.8 59.0 1.0 CA A:GLY199 4.8 49.6 1.0 CD A:GLU115 4.8 60.3 1.0 O1A A:ANP801 4.8 58.6 1.0 C A:SER118 4.9 56.3 1.0 CA A:GLU115 5.0 55.7 1.0

Magnesium binding site 2 out of 2 in the Structure of TRAP1 Fragment


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of TRAP1 Fragment within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg805 b:62.2 occ:1.00 OD1 B:ASN119 2.0 52.0 1.0 O1G B:ANP801 2.1 51.3 1.0 O B:HOH918 2.2 49.7 1.0 O1B B:ANP801 2.3 51.9 1.0 O1A B:ANP801 2.3 51.9 1.0 CG B:ASN119 2.9 57.9 1.0 ND2 B:ASN119 3.3 55.1 1.0 O B:HOH937 3.5 57.5 1.0 PB B:ANP801 3.5 56.1 1.0 PG B:ANP801 3.5 52.5 1.0 PA B:ANP801 3.6 56.8 1.0 O3A B:ANP801 3.9 61.2 1.0 OE1 B:GLU115 3.9 68.4 1.0 O B:GLU115 4.0 64.0 1.0 N3B B:ANP801 4.0 60.7 1.0 O2G B:ANP801 4.3 69.8 1.0 CB B:ASN119 4.3 48.7 1.0 CA B:GLY204 4.3 47.4 1.0 O5' B:ANP801 4.4 58.6 1.0 N B:ASN119 4.5 53.1 1.0 CA B:ASN119 4.5 57.5 1.0 O3G B:ANP801 4.6 55.0 1.0 CA B:GLY199 4.6 54.1 1.0 N B:GLY204 4.7 49.0 1.0 OD2 B:ASP122 4.8 57.9 1.0 N B:PHE205 4.8 53.8 1.0 C B:GLY204 4.8 57.2 1.0 O2A B:ANP801 4.8 60.6 1.0 O2B B:ANP801 4.9 56.8 1.0 CB B:SER118 4.9 52.4 1.0 C B:GLU115 4.9 56.4 1.0 CD B:GLU115 5.0 65.3 1.0

N.Sung, J.Lee, J.H.Kim, C.Chang, F.T.Tsai, S.Lee. 2.4 Angstrom Resolution Crystal Structure of Human TRAP1NM, the HSP90 Paralog in the Mitochondrial Matrix. Acta Crystallogr D Struct V. 72 904 2016BIOL.
ISSN: ISSN 2059-7983
PubMed: 27487821
DOI: 10.1107/S2059798316009906