Magnesium in PDB 5hru: Crystal Structure of Plasmodium Vivax Ldh in Complex with A Dna Aptamer Called PL1

All present enzymatic activity of Crystal Structure of Plasmodium Vivax Ldh in Complex with A Dna Aptamer Called PL1:
1.1.1.27;

The structure of Crystal Structure of Plasmodium Vivax Ldh in Complex with A Dna Aptamer Called PL1, PDB code: 5hru was solved by S.J.Choi, C.Ban, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.96 / 1.71
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	84.477, 84.477, 209.867, 90.00, 90.00, 90.00
R / Rfree (%)	16 / 18.5

The binding sites of Magnesium atom in the Crystal Structure of Plasmodium Vivax Ldh in Complex with A Dna Aptamer Called PL1 (pdb code 5hru). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Plasmodium Vivax Ldh in Complex with A Dna Aptamer Called PL1, PDB code: 5hru:

Magnesium binding site 1 out of 1 in the Crystal Structure of Plasmodium Vivax Ldh in Complex with A Dna Aptamer Called PL1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Plasmodium Vivax Ldh in Complex with A Dna Aptamer Called PL1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg101 b:19.6 occ:1.00 O C:HOH203 2.1 20.0 1.0 OP2 C:DT8 2.1 19.6 1.0 O C:HOH249 2.1 24.5 1.0 O C:HOH238 2.2 21.0 1.0 O B:HOH435 2.2 21.4 1.0 N7 C:DG9 2.3 18.1 1.0 C8 C:DG9 3.2 19.3 1.0 C5 C:DG9 3.3 19.4 1.0 P C:DT8 3.4 23.9 1.0 O6 C:DG9 3.7 22.6 1.0 C6 C:DG9 3.9 18.1 1.0 OP1 C:DT8 3.9 25.0 1.0 C3' C:DT7 4.1 23.6 1.0 O C:HOH237 4.2 21.8 1.0 O3' C:DT7 4.3 24.0 1.0 O C:HOH206 4.3 32.2 1.0 N9 C:DG9 4.4 19.0 1.0 NZ B:LYS84 4.4 48.5 1.0 OP2 C:DG16 4.4 27.4 1.0 OP1 C:DT7 4.4 22.2 1.0 C4 C:DG9 4.5 16.2 1.0 O5' C:DT8 4.5 24.1 1.0 O6 C:DG10 4.5 19.2 1.0 O C:HOH256 4.7 25.6 1.0 C2' C:DT7 4.7 20.7 1.0 O C:HOH228 4.8 30.9 1.0 C5' C:DG16 4.9 19.4 1.0

S.J.Choi, C.Ban. Crystal Structure of A Dna Aptamer Bound to Pvldh Elucidates Novel Single-Stranded Dna Structural Elements For Folding and Recognition Sci Rep V. 6 34998 2016.
ISSN: ESSN 2045-2322
PubMed: 27725738
DOI: 10.1038/SREP34998