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Magnesium in PDB 5hs2: Crystal Structure of Ispd Complexed with Ctp and MG2+ From Bacillus Subtilis at 1.90 Angstroms Resolution

Enzymatic activity of Crystal Structure of Ispd Complexed with Ctp and MG2+ From Bacillus Subtilis at 1.90 Angstroms Resolution

All present enzymatic activity of Crystal Structure of Ispd Complexed with Ctp and MG2+ From Bacillus Subtilis at 1.90 Angstroms Resolution:
2.7.7.60;

Protein crystallography data

The structure of Crystal Structure of Ispd Complexed with Ctp and MG2+ From Bacillus Subtilis at 1.90 Angstroms Resolution, PDB code: 5hs2 was solved by Y.Jin, Z.C.Liu, G.G.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.60 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 65.450, 49.430, 75.373, 90.00, 101.41, 90.00
R / Rfree (%) 20.4 / 25.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Ispd Complexed with Ctp and MG2+ From Bacillus Subtilis at 1.90 Angstroms Resolution (pdb code 5hs2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Ispd Complexed with Ctp and MG2+ From Bacillus Subtilis at 1.90 Angstroms Resolution, PDB code: 5hs2:

Magnesium binding site 1 out of 1 in 5hs2

Go back to Magnesium Binding Sites List in 5hs2
Magnesium binding site 1 out of 1 in the Crystal Structure of Ispd Complexed with Ctp and MG2+ From Bacillus Subtilis at 1.90 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Ispd Complexed with Ctp and MG2+ From Bacillus Subtilis at 1.90 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:24.7
occ:1.00
 O1A A:CTP301 2.0 23.9 1.0
O A:HOH484 2.0 26.2 1.0
O3G A:CTP301 2.1 26.5 1.0
O A:HOH496 2.2 23.9 1.0
O2B A:CTP301 2.2 22.8 1.0
O A:HOH508 2.2 24.4 1.0
PB A:CTP301 3.1 24.3 1.0
PG A:CTP301 3.2 25.4 1.0
PA A:CTP301 3.2 24.3 1.0
O3B A:CTP301 3.4 25.1 1.0
O3A A:CTP301 3.6 24.7 1.0
O1G A:CTP301 3.8 26.1 1.0
O5' A:CTP301 3.8 24.2 1.0
NH2 A:ARG15 3.9 28.7 1.0
O A:HOH527 4.0 27.2 1.0
O A:HOH477 4.1 34.6 1.0
O A:HOH487 4.3 41.9 1.0
O A:HOH457 4.3 43.3 1.0
O A:HOH504 4.3 27.2 1.0
O A:HOH530 4.4 35.1 1.0
O2G A:CTP301 4.4 26.4 1.0
C6 A:CTP301 4.5 24.2 1.0
O2A A:CTP301 4.5 24.6 1.0
O1B A:CTP301 4.6 24.5 1.0
C5 A:CTP301 4.6 26.0 1.0
CZ A:ARG15 4.9 30.3 1.0

Reference:

Y.Jin, Z.Liu, Y.Li, W.Liu, Y.Tao, G.Wang. A Structural and Functional Study on the 2-C-Methyl-D-Erythritol-4-Phosphate Cytidyltransferase (Ispd) From Bacillus Subtilis. Sci Rep V. 6 36379 2016.
ISSN: ESSN 2045-2322
PubMed: 27821871
DOI: 10.1038/SREP36379
Page generated: Mon Dec 14 20:28:45 2020

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