Magnesium in PDB 5hvk: Crystal Structure of LIMK1 Mutant D460N in Complex with Full-Length Cofilin-1

All present enzymatic activity of Crystal Structure of LIMK1 Mutant D460N in Complex with Full-Length Cofilin-1:
2.7.11.1;

The structure of Crystal Structure of LIMK1 Mutant D460N in Complex with Full-Length Cofilin-1, PDB code: 5hvk was solved by S.Hamill, T.J.Boggon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.11 / 3.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	81.116, 102.283, 141.900, 90.00, 90.00, 90.00
R / Rfree (%)	27.3 / 31

The binding sites of Magnesium atom in the Crystal Structure of LIMK1 Mutant D460N in Complex with Full-Length Cofilin-1 (pdb code 5hvk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of LIMK1 Mutant D460N in Complex with Full-Length Cofilin-1, PDB code: 5hvk:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of LIMK1 Mutant D460N in Complex with Full-Length Cofilin-1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of LIMK1 Mutant D460N in Complex with Full-Length Cofilin-1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:19.4 occ:1.00 O3' A:ANP1001 2.1 36.0 1.0 O A:HIS464 2.4 37.6 1.0 C3' A:ANP1001 2.6 38.7 1.0 OD1 A:ASN465 3.1 20.3 1.0 C A:HIS464 3.6 25.3 1.0 C2' A:ANP1001 3.7 20.4 1.0 O2B A:ANP1001 3.8 70.1 1.0 C4' A:ANP1001 3.9 42.3 1.0 CG2 A:THR420 4.1 20.9 1.0 CA A:ASN465 4.2 19.4 1.0 C5' A:ANP1001 4.2 38.0 1.0 CG A:ASN465 4.2 21.1 1.0 O2' A:ANP1001 4.3 24.1 1.0 N A:ASN465 4.4 20.1 1.0 O3A A:ANP1001 4.4 62.7 1.0 PB A:ANP1001 4.5 70.1 1.0 O1B A:ANP1001 4.5 70.5 1.0 CA A:HIS464 4.6 18.3 1.0 CB A:HIS464 4.7 22.4 1.0 CB A:ASN465 4.8 18.0 1.0 O5' A:ANP1001 4.8 44.2 1.0 C1' A:ANP1001 4.9 24.9 1.0 O4' A:ANP1001 5.0 33.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of LIMK1 Mutant D460N in Complex with Full-Length Cofilin-1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of LIMK1 Mutant D460N in Complex with Full-Length Cofilin-1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg702 b:36.7 occ:1.00 OD1 C:ASN465 2.8 21.0 1.0 C3' C:ANP701 3.3 29.8 1.0 O C:HIS464 3.7 30.6 1.0 O3' C:ANP701 3.7 22.2 1.0 C5' C:ANP701 3.8 33.5 1.0 CG C:ASN465 3.8 20.6 1.0 O2B C:ANP701 3.9 65.1 1.0 C8 C:ANP701 3.9 22.9 1.0 C4' C:ANP701 4.1 28.3 1.0 CA C:ASN465 4.2 13.3 1.0 CB C:ASN465 4.3 14.3 1.0 C2' C:ANP701 4.4 30.6 1.0 O1B C:ANP701 4.5 80.6 1.0 PB C:ANP701 4.6 72.7 1.0 N7 C:ANP701 4.6 32.6 1.0 C C:HIS464 4.7 16.5 1.0 O3A C:ANP701 4.7 76.3 1.0 ND2 C:ASN465 4.8 30.1 1.0 CB C:ALA477 4.8 11.1 1.0 O2A C:ANP701 4.8 55.6 1.0 N9 C:ANP701 4.8 21.2 1.0 CB C:ASP478 4.8 21.7 1.0 O5' C:ANP701 4.8 39.0 1.0 N C:ASN465 4.9 13.5 1.0 NZ C:LYS368 5.0 52.5 1.0

S.Hamill, H.J.Lou, B.E.Turk, T.J.Boggon. Structural Basis For Noncanonical Substrate Recognition of Cofilin/Adf Proteins By Lim Kinases. Mol.Cell V. 62 397 2016.
ISSN: ISSN 1097-2765
PubMed: 27153537
DOI: 10.1016/J.MOLCEL.2016.04.001