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Magnesium in PDB 5hxp: Crystal Structure of Z,Z-Farnesyl Diphosphate Synthase (D71M, E75A and H103Y Mutants) Complexed with Ipp

Enzymatic activity of Crystal Structure of Z,Z-Farnesyl Diphosphate Synthase (D71M, E75A and H103Y Mutants) Complexed with Ipp

All present enzymatic activity of Crystal Structure of Z,Z-Farnesyl Diphosphate Synthase (D71M, E75A and H103Y Mutants) Complexed with Ipp:
2.5.1.92;

Protein crystallography data

The structure of Crystal Structure of Z,Z-Farnesyl Diphosphate Synthase (D71M, E75A and H103Y Mutants) Complexed with Ipp, PDB code: 5hxp was solved by C.C.Lee, Y.T.Chan, A.H.J.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.311, 64.545, 127.156, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 24.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Z,Z-Farnesyl Diphosphate Synthase (D71M, E75A and H103Y Mutants) Complexed with Ipp (pdb code 5hxp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Z,Z-Farnesyl Diphosphate Synthase (D71M, E75A and H103Y Mutants) Complexed with Ipp, PDB code: 5hxp:

Magnesium binding site 1 out of 1 in 5hxp

Go back to Magnesium Binding Sites List in 5hxp
Magnesium binding site 1 out of 1 in the Crystal Structure of Z,Z-Farnesyl Diphosphate Synthase (D71M, E75A and H103Y Mutants) Complexed with Ipp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Z,Z-Farnesyl Diphosphate Synthase (D71M, E75A and H103Y Mutants) Complexed with Ipp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg401

b:28.3
occ:1.00
 O C:HOH518 2.0 21.0 1.0
O8 C:IPR405 2.1 25.4 1.0
OD1 C:ASP86 2.1 23.8 1.0
O C:HOH503 2.1 22.9 1.0
O9 C:IPR404 2.2 29.5 1.0
O13 C:IPR404 2.3 25.8 1.0
CG C:ASP86 3.0 22.8 1.0
P11 C:IPR404 3.2 26.8 1.0
OD2 C:ASP86 3.3 25.4 1.0
P7 C:IPR404 3.4 28.7 1.0
P7 C:IPR405 3.5 28.0 1.0
O12 C:IPR404 3.5 23.3 1.0
O10 C:IPR404 3.7 27.6 1.0
O C:HOH555 3.8 25.7 1.0
O6 C:IPR405 3.9 27.5 1.0
NH2 C:ARG137 3.9 27.7 1.0
O14 C:IPR405 4.0 28.5 1.0
NH2 C:ARG90 4.1 24.9 1.0
O6 C:IPR404 4.1 30.4 1.0
C5 C:IPR404 4.2 32.9 1.0
NH2 A:ARG297 4.2 35.7 1.0
O10 C:IPR405 4.3 26.6 1.0
NE A:ARG297 4.4 35.0 1.0
CB C:ASP86 4.4 22.0 1.0
N C:GLY87 4.5 20.4 1.0
O9 C:IPR405 4.5 26.2 1.0
O8 C:IPR404 4.5 29.8 1.0
O14 C:IPR404 4.6 24.0 1.0
P11 C:IPR405 4.6 27.9 1.0
C4 C:IPR404 4.7 33.3 1.0
NH2 C:ARG249 4.7 16.5 1.0
CZ A:ARG297 4.8 34.9 1.0
CA C:ASP86 4.8 20.7 1.0
O12 C:IPR405 4.9 26.6 1.0

Reference:

Y.T.Chan, T.P.Ko, S.H.Yao, Y.W.Chen, C.C.Lee, A.H.J.Wang. Crystal Structure and Potential Head-to-Middle Condensation Function of A Z,Z-Farnesyl Diphosphate Synthase Acs Omega V. 2 930 2017.
DOI: 10.1021/ACSOMEGA.6B00562
Page generated: Sun Sep 29 16:36:56 2024

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