Magnesium in PDB 5ij9: Cryo Em Density of Microtubule Assembled From Human TUBB3-D417H Mutant

The binding sites of Magnesium atom in the Cryo Em Density of Microtubule Assembled From Human TUBB3-D417H Mutant (pdb code 5ij9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo Em Density of Microtubule Assembled From Human TUBB3-D417H Mutant, PDB code: 5ij9:

Magnesium binding site 1 out of 1 in the Cryo Em Density of Microtubule Assembled From Human TUBB3-D417H Mutant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo Em Density of Microtubule Assembled From Human TUBB3-D417H Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:17.7 occ:1.00 O1B A:GTP501 2.1 21.9 1.0 OE2 A:GLU71 2.6 71.8 1.0 PB A:GTP501 2.7 22.1 1.0 O3B A:GTP501 2.7 22.4 1.0 O1G A:GTP501 3.0 22.6 1.0 O2B A:GTP501 3.1 22.2 1.0 HG2 A:GLU71 3.3 84.2 1.0 PG A:GTP501 3.4 22.7 1.0 CD A:GLU71 3.5 72.5 1.0 OD1 A:ASP69 3.6 64.7 1.0 CG A:GLU71 3.8 70.2 1.0 HB2 A:ASP98 3.8 81.2 1.0 H A:GLN11 3.8 64.8 1.0 HG3 A:GLU71 3.9 84.2 1.0 HB3 A:ASP98 4.0 81.2 1.0 HZ3 B:LYS252 4.1 75.6 1.0 O2G A:GTP501 4.1 23.3 1.0 HB2 A:GLN11 4.1 65.5 1.0 OD2 A:ASP69 4.1 66.4 1.0 O3A A:GTP501 4.2 21.9 1.0 CG A:ASP69 4.3 66.1 1.0 HA2 A:GLY10 4.3 66.2 1.0 HG1 A:THR145 4.3 72.2 1.0 OG1 A:THR145 4.3 60.2 1.0 CB A:ASP98 4.4 67.6 1.0 HB A:THR145 4.5 67.2 1.0 OE1 A:GLU71 4.6 70.3 1.0 N A:GLN11 4.6 54.0 1.0 HZ2 B:LYS252 4.7 75.6 1.0 O3G A:GTP501 4.7 22.8 1.0 NZ B:LYS252 4.7 63.0 1.0 HB3 A:GLN11 4.8 65.5 1.0 HZ1 B:LYS252 4.8 75.6 1.0 CB A:GLN11 4.8 54.6 1.0 H A:GLU71 4.9 74.0 1.0 CB A:THR145 5.0 56.0 1.0 O1A A:GTP501 5.0 22.0 1.0

S.C.Ti, M.C.Pamula, S.C.Howes, C.Duellberg, N.I.Cade, R.E.Kleiner, S.Forth, T.Surrey, E.Nogales, T.M.Kapoor. Mutations in Human Tubulin Proximal to the Kinesin-Binding Site Alter Dynamic Instability at Microtubule Plus- and Minus-Ends. Dev.Cell V. 37 72 2016.
ISSN: ISSN 1534-5807
PubMed: 27046833
DOI: 10.1016/J.DEVCEL.2016.03.003