Atomistry » Magnesium » PDB 5imp-5ivg » 5ip9
Atomistry »
  Magnesium »
    PDB 5imp-5ivg »
      5ip9 »

Magnesium in PDB 5ip9: Structure of Rna Polymerase II-Tfiif Complex

Enzymatic activity of Structure of Rna Polymerase II-Tfiif Complex

All present enzymatic activity of Structure of Rna Polymerase II-Tfiif Complex:
2.7.7.6;

Protein crystallography data

The structure of Structure of Rna Polymerase II-Tfiif Complex, PDB code: 5ip9 was solved by C.Plaschka, M.Hantsche, C.Dienemann, C.Burzinski, J.Plitzko, P.Cramer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.93 / 3.90
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 222.820, 392.730, 283.420, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 19.4

Other elements in 5ip9:

The structure of Structure of Rna Polymerase II-Tfiif Complex also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Rna Polymerase II-Tfiif Complex (pdb code 5ip9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Rna Polymerase II-Tfiif Complex, PDB code: 5ip9:

Magnesium binding site 1 out of 1 in 5ip9

Go back to Magnesium Binding Sites List in 5ip9
Magnesium binding site 1 out of 1 in the Structure of Rna Polymerase II-Tfiif Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Rna Polymerase II-Tfiif Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1803

b:51.0
occ:1.00
OD1 A:ASP483 1.9 0.3 1.0
CG A:ASP483 2.7 0.4 1.0
OD2 A:ASP483 2.9 0.2 1.0
OD1 A:ASP481 3.3 74.5 1.0
OD1 A:ASP485 3.4 98.3 1.0
CG A:ASP481 4.0 79.9 1.0
OD2 A:ASP481 4.1 82.2 1.0
CB A:ASP483 4.2 93.6 1.0
O A:ASP483 4.4 95.2 1.0
CG A:ASP485 4.5 92.9 1.0
CE B:LYS987 4.6 0.1 1.0
C A:ASP483 4.9 92.8 1.0

Reference:

C.Plaschka, M.Hantsche, C.Dienemann, C.Burzinski, J.Plitzko, P.Cramer. Transcription Initiation Complex Structures Elucidate Dna Opening. Nature V. 533 353 2016.
ISSN: ESSN 1476-4687
PubMed: 27193681
DOI: 10.1038/NATURE17990
Page generated: Mon Dec 14 20:30:29 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy