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Magnesium in PDB 5it4: Crystal Structure of Mycobacterium Avium SERB2 Mutant D343N

Enzymatic activity of Crystal Structure of Mycobacterium Avium SERB2 Mutant D343N

All present enzymatic activity of Crystal Structure of Mycobacterium Avium SERB2 Mutant D343N:
3.1.3.3;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Avium SERB2 Mutant D343N, PDB code: 5it4 was solved by S.Shree, R.Ramachandran, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.63 / 2.10
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 66.035, 109.140, 134.024, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 23.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Mycobacterium Avium SERB2 Mutant D343N (pdb code 5it4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Mycobacterium Avium SERB2 Mutant D343N, PDB code: 5it4:

Magnesium binding site 1 out of 1 in 5it4

Go back to Magnesium Binding Sites List in 5it4
Magnesium binding site 1 out of 1 in the Crystal Structure of Mycobacterium Avium SERB2 Mutant D343N


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mycobacterium Avium SERB2 Mutant D343N within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:41.3
occ:1.00
OD2 A:ASP187 2.0 40.1 1.0
O A:HOH629 2.0 37.3 1.0
O A:HOH690 2.1 42.2 1.0
OD1 A:ASN343 2.2 43.0 1.0
O A:ASP189 2.2 35.4 1.0
O A:HOH635 2.3 37.0 1.0
CG A:ASP187 3.1 47.9 1.0
CG A:ASN343 3.1 40.9 1.0
C A:ASP189 3.3 43.5 1.0
ND2 A:ASN343 3.4 43.7 1.0
OD1 A:ASP187 3.5 50.0 1.0
CB A:ASP189 3.9 41.8 1.0
CA A:ASP189 4.0 37.5 1.0
OE2 A:GLU196 4.1 50.6 1.0
N A:ASP189 4.1 34.6 1.0
OD2 A:ASP347 4.3 43.6 1.0
CB A:ASP187 4.4 39.8 1.0
OG1 A:THR191 4.4 39.7 1.0
N A:SER190 4.4 45.3 1.0
CB A:ASN343 4.5 37.0 1.0
CB A:SER190 4.5 47.8 1.0
SD A:MET219 4.6 58.6 1.0
O A:HOH619 4.6 46.6 1.0
N A:GLY344 4.7 45.5 1.0
N A:ASN343 4.7 37.1 1.0
O A:HOH681 4.8 36.1 1.0
CA A:SER190 4.8 50.0 1.0
N A:THR191 4.9 39.9 1.0
C A:SER190 4.9 43.5 1.0
C A:VAL188 4.9 34.1 1.0
OE1 A:GLU196 4.9 57.2 1.0
CD A:GLU196 5.0 52.3 1.0

Reference:

S.Shree, R.Ramachandran. Crystal Structure of Mycobacterium Avium SERB2 Mutant D343N (MAV_3907) at pH 6.6 To Be Published.
Page generated: Sun Sep 29 16:55:43 2024

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