Magnesium in PDB 5itz: Crystal Structure of the Sac Domain of Cpap in A Complex with Tubulin and Darpin

The structure of Crystal Structure of the Sac Domain of Cpap in A Complex with Tubulin and Darpin, PDB code: 5itz was solved by A.Sharma, M.O.Steinmetz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.64 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	61.080, 85.340, 98.690, 90.00, 91.77, 90.00
R / Rfree (%)	17.7 / 21.7

The binding sites of Magnesium atom in the Crystal Structure of the Sac Domain of Cpap in A Complex with Tubulin and Darpin (pdb code 5itz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Sac Domain of Cpap in A Complex with Tubulin and Darpin, PDB code: 5itz:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Sac Domain of Cpap in A Complex with Tubulin and Darpin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Sac Domain of Cpap in A Complex with Tubulin and Darpin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:31.3 occ:1.00 O2G A:GTP501 2.0 26.5 1.0 O1B A:GTP501 2.1 30.1 1.0 O A:HOH780 2.1 44.9 1.0 O A:HOH636 2.1 46.1 1.0 O A:HOH644 2.1 46.1 1.0 O A:HOH641 2.1 30.4 1.0 PB A:GTP501 3.2 25.8 1.0 PG A:GTP501 3.2 31.5 1.0 O3B A:GTP501 3.6 32.4 1.0 O3G A:GTP501 3.6 29.6 1.0 O3A A:GTP501 3.7 26.9 1.0 NZ B:LYS254 4.1 40.1 1.0 OE2 A:GLU71 4.1 41.2 1.0 CB A:GLN11 4.1 30.8 1.0 OD1 A:ASP69 4.1 32.6 1.0 OD2 A:ASP98 4.1 41.3 1.0 OD2 A:ASP69 4.3 34.2 1.0 N A:GLN11 4.4 26.6 1.0 CG A:GLU71 4.4 39.4 1.0 O1A A:GTP501 4.4 29.5 1.0 O1G A:GTP501 4.4 27.9 1.0 CB A:ASP98 4.4 38.0 1.0 O2B A:GTP501 4.5 30.1 1.0 ND2 B:ASN249 4.6 64.6 1.0 OE1 A:GLN11 4.6 35.0 1.0 CG A:ASP69 4.6 33.3 1.0 CG A:ASP98 4.7 40.1 1.0 PA A:GTP501 4.7 30.7 1.0 CD A:GLU71 4.7 40.7 1.0 CA A:GLN11 4.8 28.1 1.0 CG B:ASN249 4.9 63.8 1.0

A.Sharma, A.Aher, N.J.Dynes, D.Frey, E.A.Katrukha, R.Jaussi, I.Grigoriev, M.Croisier, R.A.Kammerer, A.Akhmanova, P.Gonczy, M.O.Steinmetz. Centriolar Cpap/Sas-4 Imparts Slow Processive Microtubule Growth. Dev.Cell V. 37 362 2016.
ISSN: ISSN 1534-5807
PubMed: 27219064
DOI: 10.1016/J.DEVCEL.2016.04.024