Atomistry » Magnesium » PDB 5imp-5ivg » 5iuj
Atomistry »
  Magnesium »
    PDB 5imp-5ivg »
      5iuj »

Magnesium in PDB 5iuj: Crystal Structure of the Desk-Desr Complex in the Phosphotransfer State with Low MG2+ (20 Mm)

Enzymatic activity of Crystal Structure of the Desk-Desr Complex in the Phosphotransfer State with Low MG2+ (20 Mm)

All present enzymatic activity of Crystal Structure of the Desk-Desr Complex in the Phosphotransfer State with Low MG2+ (20 Mm):
2.7.13.3;

Protein crystallography data

The structure of Crystal Structure of the Desk-Desr Complex in the Phosphotransfer State with Low MG2+ (20 Mm), PDB code: 5iuj was solved by F.Trajtenberg, J.A.Imelio, N.Larrieux, A.Buschiazzo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 66.70 / 3.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 87.820, 114.619, 91.597, 90.00, 116.44, 90.00
R / Rfree (%) 18.7 / 24

Other elements in 5iuj:

The structure of Crystal Structure of the Desk-Desr Complex in the Phosphotransfer State with Low MG2+ (20 Mm) also contains other interesting chemical elements:

Potassium (K) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Desk-Desr Complex in the Phosphotransfer State with Low MG2+ (20 Mm) (pdb code 5iuj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of the Desk-Desr Complex in the Phosphotransfer State with Low MG2+ (20 Mm), PDB code: 5iuj:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 5iuj

Go back to Magnesium Binding Sites List in 5iuj
Magnesium binding site 1 out of 4 in the Crystal Structure of the Desk-Desr Complex in the Phosphotransfer State with Low MG2+ (20 Mm)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Desk-Desr Complex in the Phosphotransfer State with Low MG2+ (20 Mm) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:0.2
occ:0.70
 O1G A:ACP401 1.9 0.2 1.0
O A:HOH501 2.0 79.6 1.0
O2A A:ACP401 2.0 0.4 1.0
OD1 A:ASN293 2.1 98.8 1.0
O2B A:ACP401 2.3 0.2 1.0
OE2 A:GLU289 2.3 0.0 1.0
CG A:ASN293 3.1 0.9 1.0
PA A:ACP401 3.2 0.6 1.0
PG A:ACP401 3.2 0.7 1.0
PB A:ACP401 3.4 0.4 1.0
O3A A:ACP401 3.4 0.9 1.0
CD A:GLU289 3.4 0.3 1.0
O2G A:ACP401 3.5 0.1 1.0
ND2 A:ASN293 3.5 95.2 1.0
OE1 A:GLU289 3.8 0.3 1.0
C3B A:ACP401 3.9 0.1 1.0
NE2 A:HIS297 4.1 0.2 1.0
O5' A:ACP401 4.2 0.8 1.0
O1A A:ACP401 4.3 0.7 1.0
CA A:GLY336 4.4 0.7 1.0
N A:GLY336 4.4 0.4 1.0
O3G A:ACP401 4.4 1.0 1.0
CB A:ASN293 4.5 86.8 1.0
O1B A:ACP401 4.7 0.4 1.0
CG A:GLU289 4.7 93.6 1.0
CD2 A:HIS297 4.7 0.8 1.0
CA A:ASN293 4.9 88.9 1.0
CD1 A:LEU337 4.9 0.8 1.0

Magnesium binding site 2 out of 4 in 5iuj

Go back to Magnesium Binding Sites List in 5iuj
Magnesium binding site 2 out of 4 in the Crystal Structure of the Desk-Desr Complex in the Phosphotransfer State with Low MG2+ (20 Mm)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Desk-Desr Complex in the Phosphotransfer State with Low MG2+ (20 Mm) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:93.4
occ:1.00
 OE2 B:GLU289 2.0 0.2 1.0
O1B B:ACP401 2.0 92.2 1.0
OD1 B:ASN293 2.0 85.8 1.0
O1G B:ACP401 2.1 94.3 1.0
O B:HOH501 2.3 61.6 1.0
O2A B:ACP401 2.4 96.6 1.0
CG B:ASN293 3.0 92.8 1.0
CD B:GLU289 3.1 0.9 1.0
PB B:ACP401 3.2 96.5 1.0
ND2 B:ASN293 3.4 81.3 1.0
PG B:ACP401 3.4 94.1 1.0
PA B:ACP401 3.4 0.1 1.0
O3A B:ACP401 3.4 98.4 1.0
OE1 B:GLU289 3.6 0.1 1.0
C3B B:ACP401 3.8 96.0 1.0
O2G B:ACP401 3.9 92.5 1.0
CA B:GLY336 4.1 94.9 1.0
O5' B:ACP401 4.2 0.0 1.0
NE2 B:HIS297 4.2 0.7 1.0
N B:GLY336 4.3 98.9 1.0
CG B:GLU289 4.3 82.2 1.0
O2B B:ACP401 4.4 0.4 1.0
CB B:ASN293 4.4 83.8 1.0
CE B:LYS296 4.4 0.9 1.0
NZ B:LYS296 4.5 0.1 1.0
O3G B:ACP401 4.6 95.3 1.0
O1A B:ACP401 4.7 99.4 1.0
CA B:ASN293 4.8 86.1 1.0
O B:GLU289 4.8 75.3 1.0
CD2 B:HIS297 4.8 0.8 1.0
N B:ASN293 5.0 83.5 1.0
C B:GLY336 5.0 97.5 1.0

Magnesium binding site 3 out of 4 in 5iuj

Go back to Magnesium Binding Sites List in 5iuj
Magnesium binding site 3 out of 4 in the Crystal Structure of the Desk-Desr Complex in the Phosphotransfer State with Low MG2+ (20 Mm)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the Desk-Desr Complex in the Phosphotransfer State with Low MG2+ (20 Mm) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg402

b:0.9
occ:0.50
 O2A D:ACP401 2.0 1.0 1.0
O D:HOH501 2.1 0.4 1.0
O1G D:ACP401 2.1 0.2 1.0
OD1 D:ASN293 2.1 91.5 1.0
O2B D:ACP401 2.2 0.3 1.0
OE2 D:GLU289 2.2 0.4 1.0
CG D:ASN293 3.2 0.5 1.0
CD D:GLU289 3.2 0.3 1.0
PA D:ACP401 3.2 0.2 1.0
PG D:ACP401 3.3 0.2 1.0
PB D:ACP401 3.3 0.4 1.0
O2G D:ACP401 3.4 0.7 1.0
O3A D:ACP401 3.4 0.5 1.0
OE1 D:GLU289 3.5 0.7 1.0
ND2 D:ASN293 3.6 0.5 1.0
C3B D:ACP401 3.8 0.0 1.0
NE2 D:HIS297 4.2 0.1 1.0
O5' D:ACP401 4.2 0.7 1.0
O1A D:ACP401 4.4 0.6 1.0
CA D:GLY336 4.4 0.7 1.0
N D:GLY336 4.4 0.6 1.0
CB D:ASN293 4.5 88.8 1.0
CG D:GLU289 4.5 93.5 1.0
O1B D:ACP401 4.6 0.0 1.0
O3G D:ACP401 4.6 0.4 1.0
CA D:ASN293 4.8 92.2 1.0
CD2 D:HIS297 4.8 0.4 1.0
O D:GLU289 5.0 80.7 1.0

Magnesium binding site 4 out of 4 in 5iuj

Go back to Magnesium Binding Sites List in 5iuj
Magnesium binding site 4 out of 4 in the Crystal Structure of the Desk-Desr Complex in the Phosphotransfer State with Low MG2+ (20 Mm)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of the Desk-Desr Complex in the Phosphotransfer State with Low MG2+ (20 Mm) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg402

b:95.1
occ:0.90
 OE2 E:GLU289 1.9 87.9 1.0
O1B E:ACP401 2.0 88.4 1.0
O1G E:ACP401 2.1 93.3 1.0
OD1 E:ASN293 2.2 92.6 1.0
O E:HOH501 2.2 47.9 1.0
O1A E:ACP401 2.3 84.5 1.0
CD E:GLU289 3.0 0.7 1.0
PB E:ACP401 3.0 92.9 1.0
CG E:ASN293 3.1 92.6 1.0
PG E:ACP401 3.2 95.0 1.0
O3A E:ACP401 3.3 93.1 1.0
PA E:ACP401 3.4 90.2 1.0
ND2 E:ASN293 3.4 79.8 1.0
OE1 E:GLU289 3.5 83.1 1.0
O2G E:ACP401 3.6 93.7 1.0
C3B E:ACP401 3.6 95.9 1.0
CA E:GLY336 4.1 86.4 1.0
N E:GLY336 4.2 91.3 1.0
O5' E:ACP401 4.3 93.7 1.0
CG E:GLU289 4.3 82.1 1.0
O2B E:ACP401 4.3 97.1 1.0
NE2 E:HIS297 4.4 88.6 1.0
CB E:ASN293 4.5 77.1 1.0
O3G E:ACP401 4.5 96.3 1.0
O2A E:ACP401 4.6 89.3 1.0
O E:GLU289 4.9 73.5 1.0
CA E:ASN293 4.9 78.8 1.0
C E:GLY336 4.9 88.6 1.0
N E:LEU337 5.0 85.2 1.0

Reference:

F.Trajtenberg, J.A.Imelio, M.R.Machado, N.Larrieux, M.A.Marti, G.Obal, A.E.Mechaly, A.Buschiazzo. Regulation of Signaling Directionality Revealed By 3D Snapshots of A Kinase:Regulator Complex in Action. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27938660
DOI: 10.7554/ELIFE.21422
Page generated: Sun Sep 29 16:56:41 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy