Magnesium in PDB 5ix1: Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and H3K4ME3 Peptide

The structure of Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and H3K4ME3 Peptide, PDB code: 5ix1 was solved by S.Li, J.Du, D.J.Patel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.76 / 2.60
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	111.353, 149.079, 173.473, 90.00, 90.00, 90.00
R / Rfree (%)	21.8 / 23

The structure of Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and H3K4ME3 Peptide also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and H3K4ME3 Peptide (pdb code 5ix1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and H3K4ME3 Peptide, PDB code: 5ix1:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and H3K4ME3 Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and H3K4ME3 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg503 b:60.6 occ:1.00 OD1 A:ASN39 1.9 64.3 1.0 O1G A:ANP502 2.1 0.4 1.0 O1A A:ANP502 2.1 50.1 1.0 O A:HOH621 2.2 70.6 1.0 O A:HOH604 2.2 68.5 1.0 O1B A:ANP502 2.3 52.5 1.0 CG A:ASN39 2.9 61.4 1.0 ND2 A:ASN39 3.3 61.4 1.0 PA A:ANP502 3.4 51.9 1.0 PB A:ANP502 3.4 54.5 1.0 PG A:ANP502 3.5 0.2 1.0 OE2 A:GLU35 3.7 62.4 1.0 NZ A:LYS88 3.8 61.9 1.0 O3A A:ANP502 3.9 51.4 1.0 N3B A:ANP502 3.9 99.3 1.0 O A:HOH608 3.9 87.8 1.0 O5' A:ANP502 4.0 65.8 1.0 O A:GLU35 4.1 58.8 1.0 CB A:ASN39 4.1 59.1 1.0 O2G A:ANP502 4.3 0.8 1.0 N A:ASN39 4.3 57.4 1.0 CA A:ASN39 4.4 60.1 1.0 O3G A:ANP502 4.4 0.2 1.0 CG A:GLU35 4.5 58.1 1.0 CA A:GLY103 4.5 51.9 1.0 CD A:GLU35 4.5 60.6 1.0 CA A:GLY98 4.5 57.6 1.0 CB A:ASP38 4.6 59.1 1.0 OD2 A:ASP42 4.6 61.1 1.0 O2A A:ANP502 4.6 49.3 1.0 O2B A:ANP502 4.7 52.9 1.0 C A:ASP38 4.9 58.4 1.0 N A:GLY103 5.0 50.2 1.0 C A:GLY103 5.0 56.6 1.0 N A:PHE104 5.0 53.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and H3K4ME3 Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and H3K4ME3 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg503 b:57.6 occ:1.00 OD1 B:ASN39 1.7 65.8 1.0 O3G B:ANP502 2.1 62.8 1.0 O B:HOH609 2.3 70.6 1.0 O B:HOH603 2.3 88.3 1.0 O2B B:ANP502 2.3 58.3 1.0 O2A B:ANP502 2.4 57.8 1.0 CG B:ASN39 2.7 61.5 1.0 O B:HOH604 3.1 60.4 1.0 ND2 B:ASN39 3.3 60.5 1.0 PG B:ANP502 3.5 57.8 1.0 PB B:ANP502 3.6 57.3 1.0 PA B:ANP502 3.7 54.5 1.0 OE1 B:GLU35 3.8 58.5 1.0 N3B B:ANP502 4.0 44.3 1.0 O B:GLU35 4.0 56.0 1.0 CB B:ASN39 4.0 57.1 1.0 O3A B:ANP502 4.1 56.6 1.0 N B:ASN39 4.2 55.6 1.0 CA B:ASN39 4.2 57.6 1.0 O2G B:ANP502 4.3 54.6 1.0 O5' B:ANP502 4.3 59.1 1.0 CB B:ASP38 4.4 58.1 1.0 CA B:GLY98 4.5 62.0 1.0 O1G B:ANP502 4.5 55.7 1.0 OD2 B:ASP42 4.5 62.5 1.0 CA B:GLY103 4.7 54.2 1.0 C B:ASP38 4.8 56.4 1.0 O1B B:ANP502 4.8 55.4 1.0 C B:GLU35 4.9 55.7 1.0 O1A B:ANP502 4.9 55.3 1.0 CD B:GLU35 4.9 58.8 1.0 N B:GLY98 5.0 61.5 1.0

S.Li, L.Yen, W.A.Pastor, J.B.Johnston, J.Du, C.J.Shew, W.Liu, J.Ho, B.Stender, A.T.Clark, A.L.Burlingame, L.Daxinger, D.J.Patel, S.E.Jacobsen. Mouse MORC3 Is A Ghkl Atpase That Localizes to H3K4ME3 Marked Chromatin Proc.Natl.Acad.Sci.Usa V. 113 E5108 2016.
ISSN: ESSN 1091-6490
PubMed: 27528681
DOI: 10.1073/PNAS.1609709113