Magnesium in PDB 5ix2: Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and Unmodified H3 Peptide

The structure of Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and Unmodified H3 Peptide, PDB code: 5ix2 was solved by S.Li, J.Du, D.J.Patel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.75 / 2.90
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	112.202, 147.542, 173.611, 90.00, 90.00, 90.00
R / Rfree (%)	22 / 23.6

The structure of Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and Unmodified H3 Peptide also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and Unmodified H3 Peptide (pdb code 5ix2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and Unmodified H3 Peptide, PDB code: 5ix2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and Unmodified H3 Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and Unmodified H3 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg503 b:56.4 occ:1.00 OD1 A:ASN39 2.2 68.7 1.0 O2G A:ANP502 2.5 0.7 1.0 O1B A:ANP502 2.5 53.5 1.0 O1A A:ANP502 3.3 66.3 1.0 CG A:ASN39 3.4 67.7 1.0 OE2 A:GLU35 3.5 66.0 1.0 CB A:ASP38 3.8 61.9 1.0 PG A:ANP502 3.8 48.6 1.0 PB A:ANP502 3.8 55.9 1.0 N A:ASN39 3.9 61.9 1.0 O A:GLU35 4.0 58.1 1.0 N3B A:ANP502 4.0 0.2 1.0 CA A:ASN39 4.0 65.8 1.0 OD2 A:ASP42 4.0 72.0 1.0 CA A:GLY98 4.1 64.7 1.0 C A:ASP38 4.2 64.0 1.0 O3A A:ANP502 4.2 45.0 1.0 NZ A:LYS88 4.3 72.1 1.0 O3G A:ANP502 4.3 38.9 1.0 CB A:ASN39 4.3 65.4 1.0 ND2 A:ASN39 4.4 68.1 1.0 N A:GLY98 4.4 64.0 1.0 PA A:ANP502 4.4 65.8 1.0 O A:ASP38 4.5 60.8 1.0 CA A:ASP38 4.6 63.5 1.0 CD A:GLU35 4.6 63.6 1.0 NZ A:LYS358 4.8 58.9 1.0 CG A:ASP38 4.9 63.9 1.0 CE A:LYS88 4.9 67.2 1.0 O1G A:ANP502 4.9 46.7 1.0 CG A:ASP42 4.9 70.1 1.0 OD2 A:ASP38 5.0 64.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and Unmodified H3 Peptide


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Mouse MORC3 Atpase-Cw Cassette in Complex with Amppnp and Unmodified H3 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg503 b:61.5 occ:1.00 ND2 B:ASN39 2.3 70.6 1.0 O1G B:ANP502 2.3 71.4 1.0 OE1 B:GLU35 2.6 61.1 1.0 O1A B:ANP502 2.8 58.5 1.0 O B:GLU35 3.2 55.3 1.0 CG B:ASN39 3.4 70.2 1.0 O2B B:ANP502 3.5 62.3 1.0 PG B:ANP502 3.8 65.8 1.0 CD B:GLU35 3.8 61.1 1.0 OD1 B:ASN39 4.0 79.0 1.0 C B:GLU35 4.0 54.7 1.0 CA B:GLY103 4.0 56.2 1.0 CB B:ASP38 4.0 58.2 1.0 N B:ASN39 4.2 60.6 1.0 CA B:GLU35 4.2 55.1 1.0 PA B:ANP502 4.3 57.3 1.0 CB B:GLU35 4.3 53.0 1.0 O3G B:ANP502 4.3 31.6 1.0 CB B:ASN39 4.4 59.7 1.0 CA B:ASN39 4.5 69.4 1.0 O2G B:ANP502 4.5 35.0 1.0 C B:GLY103 4.5 57.2 1.0 PB B:ANP502 4.6 51.0 1.0 OE2 B:GLU35 4.6 65.0 1.0 N B:GLY103 4.6 55.4 1.0 CG B:GLU35 4.7 56.9 1.0 C B:ASP38 4.7 62.2 1.0 N B:PHE104 4.7 57.0 1.0 N3B B:ANP502 4.8 38.0 1.0 OD2 B:ASP38 4.8 59.5 1.0 O3A B:ANP502 4.8 40.0 1.0 NZ B:LYS358 4.9 52.1 1.0 NZ B:LYS88 4.9 69.0 1.0 CA B:ASP38 4.9 60.0 1.0 CG B:ASP38 5.0 59.6 1.0 O2A B:ANP502 5.0 57.4 1.0

S.Li, L.Yen, W.A.Pastor, J.B.Johnston, J.Du, C.J.Shew, W.Liu, J.Ho, B.Stender, A.T.Clark, A.L.Burlingame, L.Daxinger, D.J.Patel, S.E.Jacobsen. Mouse MORC3 Is A Ghkl Atpase That Localizes to H3K4ME3 Marked Chromatin Proc.Natl.Acad.Sci.Usa V. 113 E5108 2016.
ISSN: ESSN 1091-6490
PubMed: 27528681
DOI: 10.1073/PNAS.1609709113