Magnesium in PDB 5j04: Crystal Structure of Enolase From Synechococcus Elongatus, Complex with Phosphoenolpyruvate

All present enzymatic activity of Crystal Structure of Enolase From Synechococcus Elongatus, Complex with Phosphoenolpyruvate:
4.2.1.11;

The structure of Crystal Structure of Enolase From Synechococcus Elongatus, Complex with Phosphoenolpyruvate, PDB code: 5j04 was solved by J.M.Gonzalez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	73.55 / 2.30
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	164.230, 164.230, 72.680, 90.00, 90.00, 90.00
R / Rfree (%)	21.4 / 24.6

The structure of Crystal Structure of Enolase From Synechococcus Elongatus, Complex with Phosphoenolpyruvate also contains other interesting chemical elements:

Calcium

(Ca)

6 atoms

The binding sites of Magnesium atom in the Crystal Structure of Enolase From Synechococcus Elongatus, Complex with Phosphoenolpyruvate (pdb code 5j04). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Enolase From Synechococcus Elongatus, Complex with Phosphoenolpyruvate, PDB code: 5j04:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Enolase From Synechococcus Elongatus, Complex with Phosphoenolpyruvate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Enolase From Synechococcus Elongatus, Complex with Phosphoenolpyruvate within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:10.1 occ:1.00 O A:HOH631 1.9 24.7 1.0 O A:HOH623 2.1 18.6 1.0 O1 A:PEP501 2.1 39.0 1.0 OE2 A:GLU287 2.1 34.0 1.0 OD2 A:ASP246 2.4 20.1 1.0 OD2 A:ASP314 2.5 23.4 1.0 O A:HOH606 3.0 26.4 1.0 C1 A:PEP501 3.2 41.2 1.0 CD A:GLU287 3.3 26.1 1.0 CG A:ASP246 3.4 22.5 1.0 CG A:ASP314 3.5 23.2 1.0 O2' A:PEP501 3.7 41.5 1.0 OD1 A:ASP246 3.8 23.4 1.0 OE1 A:GLU287 3.8 22.9 1.0 CB A:ASP314 3.9 23.4 1.0 NZ A:LYS390 3.9 32.5 1.0 O A:HOH632 4.3 33.0 1.0 CD2 A:LEU337 4.3 23.7 1.0 OD2 A:ASP288 4.3 20.9 1.0 CG A:GLU287 4.4 24.7 1.0 C2 A:PEP501 4.4 32.0 1.0 NZ A:LYS339 4.4 30.0 1.0 OD1 A:ASP314 4.5 20.3 1.0 O2 A:PEP501 4.6 36.6 1.0 NE2 A:GLN167 4.6 27.8 1.0 CB A:ASP246 4.7 22.9 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Enolase From Synechococcus Elongatus, Complex with Phosphoenolpyruvate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Enolase From Synechococcus Elongatus, Complex with Phosphoenolpyruvate within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:15.2 occ:1.00 O B:HOH613 1.9 33.4 1.0 O B:HOH647 2.1 33.4 1.0 OE2 B:GLU287 2.2 33.4 1.0 OD2 B:ASP246 2.3 29.2 1.0 O2' B:PEP501 2.4 54.9 1.0 OD2 B:ASP314 2.5 23.1 1.0 O1 B:PEP501 3.1 54.8 1.0 C1 B:PEP501 3.1 53.6 1.0 CD B:GLU287 3.3 32.8 1.0 CG B:ASP246 3.3 25.7 1.0 CG B:ASP314 3.5 22.8 1.0 O B:HOH624 3.6 45.4 1.0 OD1 B:ASP246 3.7 24.9 1.0 OE1 B:GLU287 3.9 26.4 1.0 CB B:ASP314 3.9 24.0 1.0 NZ B:LYS390 3.9 38.7 1.0 O B:HOH657 4.2 38.0 1.0 OD2 B:ASP288 4.3 24.2 1.0 CG B:GLU287 4.4 30.3 1.0 CD2 B:LEU337 4.4 29.1 1.0 NZ B:LYS339 4.5 31.1 1.0 NE2 B:GLN167 4.5 28.3 1.0 C2 B:PEP501 4.5 51.6 1.0 OD1 B:ASP314 4.6 21.4 1.0 CB B:ASP246 4.7 24.2 1.0

J.M.Gonzalez, R.Marti-Arbona, C.J.Unkefer. Crystal Structure of Enolase From Synechococcus Elongatus To Be Published.