Magnesium in PDB 5j1j: Structure of Flen-Amppnp Complex

The structure of Structure of Flen-Amppnp Complex, PDB code: 5j1j was solved by D.Jain, Chanchal, P.Banerjee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.25 / 1.55
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	49.050, 206.535, 103.118, 90.00, 90.00, 90.00
R / Rfree (%)	17 / 18.9

The binding sites of Magnesium atom in the Structure of Flen-Amppnp Complex (pdb code 5j1j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Flen-Amppnp Complex, PDB code: 5j1j:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Flen-Amppnp Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Flen-Amppnp Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg305 b:12.4 occ:1.00 O1G A:ANP301 2.0 13.0 1.0 O1B A:ANP301 2.1 11.4 1.0 O A:HOH494 2.1 11.5 1.0 OG1 A:THR25 2.1 13.6 1.0 O A:HOH470 2.1 12.5 1.0 O A:HOH450 2.1 13.4 1.0 CB A:THR25 3.2 12.7 1.0 PG A:ANP301 3.2 12.9 1.0 PB A:ANP301 3.2 12.3 1.0 N3B A:ANP301 3.5 12.2 1.0 N A:THR25 3.8 11.7 1.0 CA A:THR25 4.1 12.4 1.0 O2G A:ANP301 4.1 14.8 1.0 O A:HOH428 4.1 17.6 1.0 OD2 A:ASP127 4.1 21.4 1.0 ND2 A:ASN53 4.2 11.5 1.0 O2B A:ANP301 4.2 12.5 1.0 OD1 A:ASP127 4.3 17.2 1.0 O2A A:ANP301 4.3 13.6 1.0 CG2 A:THR25 4.3 16.3 1.0 OD2 A:ASP48 4.3 16.5 1.0 O A:HOH438 4.3 17.8 1.0 O B:HOH659 4.3 21.8 1.0 O3A A:ANP301 4.4 11.7 1.0 O3G A:ANP301 4.4 14.2 1.0 CB A:LYS24 4.6 13.5 1.0 CG A:ASP127 4.6 20.5 1.0 CB A:ASN53 4.7 16.2 1.0 O A:THR128 4.7 16.4 1.0 CE A:LYS24 4.7 14.0 1.0 PA A:ANP301 4.7 12.5 1.0 C A:LYS24 4.8 11.9 1.0 O1A A:ANP301 4.9 13.6 1.0 CG A:ASN53 4.9 15.3 1.0 NZ A:LYS24 5.0 13.0 1.0

Magnesium binding site 2 out of 2 in the Structure of Flen-Amppnp Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Flen-Amppnp Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg504 b:12.6 occ:1.00 O2G B:ANP501 2.0 12.7 1.0 O B:HOH636 2.1 13.2 1.0 O B:HOH660 2.1 13.8 1.0 OG1 B:THR25 2.1 13.2 1.0 O1B B:ANP501 2.1 12.8 1.0 O B:HOH664 2.1 13.7 1.0 CB B:THR25 3.2 12.4 1.0 PG B:ANP501 3.3 12.9 1.0 PB B:ANP501 3.3 12.1 1.0 N3B B:ANP501 3.4 11.7 1.0 N B:THR25 3.8 11.9 1.0 CA B:THR25 4.1 11.1 1.0 O3G B:ANP501 4.1 14.3 1.0 O B:HOH638 4.1 17.1 1.0 OD2 B:ASP127 4.1 18.0 1.0 ND2 B:ASN53 4.2 10.9 1.0 OD2 B:ASP48 4.3 18.4 1.0 OD1 B:ASP127 4.3 18.1 1.0 O2B B:ANP501 4.3 12.4 1.0 O2A B:ANP501 4.3 14.2 1.0 O A:HOH498 4.3 22.8 1.0 CG2 B:THR25 4.3 14.3 1.0 O B:HOH628 4.4 18.9 1.0 O1G B:ANP501 4.4 15.8 1.0 O3A B:ANP501 4.4 11.8 1.0 CB B:LYS24 4.6 12.8 1.0 CE B:LYS24 4.6 14.2 1.0 CG B:ASP127 4.6 19.8 1.0 CB B:ASN53 4.6 13.1 1.0 PA B:ANP501 4.7 12.7 1.0 O B:THR128 4.7 17.3 1.0 C B:LYS24 4.8 12.4 1.0 O1A B:ANP501 4.8 13.9 1.0 NZ B:LYS24 4.9 14.5 1.0 CG B:ASN53 4.9 15.6 1.0

Chanchal, P.Banerjee, D.Jain. Atp-Induced Structural Remodeling in the Antiactivator Flen Enables Formation of the Functional Dimeric Form Structure V. 25 243 2017.
ISSN: ISSN 1878-4186
PubMed: 28065505
DOI: 10.1016/J.STR.2016.11.022