Magnesium in PDB 5j3t: Crystal Structure of S. Pombe DCP2:DCP1:EDC1 Mrna Decapping Complex

All present enzymatic activity of Crystal Structure of S. Pombe DCP2:DCP1:EDC1 Mrna Decapping Complex:
3.6.1.62;

The structure of Crystal Structure of S. Pombe DCP2:DCP1:EDC1 Mrna Decapping Complex, PDB code: 5j3t was solved by E.Valkov, S.Muthukumar, C.T.Chang, S.Jonas, O.Weichenrieder, E.Izaurralde, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.43 / 1.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	98.809, 41.371, 93.718, 90.00, 114.04, 90.00
R / Rfree (%)	18.6 / 21.9

The binding sites of Magnesium atom in the Crystal Structure of S. Pombe DCP2:DCP1:EDC1 Mrna Decapping Complex (pdb code 5j3t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of S. Pombe DCP2:DCP1:EDC1 Mrna Decapping Complex, PDB code: 5j3t:

Magnesium binding site 1 out of 1 in the Crystal Structure of S. Pombe DCP2:DCP1:EDC1 Mrna Decapping Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of S. Pombe DCP2:DCP1:EDC1 Mrna Decapping Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg304 b:43.8 occ:1.00 OH B:TYR92 2.4 38.9 1.0 CZ B:TYR92 3.5 39.0 1.0 CE1 B:TYR92 3.7 36.4 1.0 CE2 B:TYR92 4.7 37.8 1.0

E.Valkov, S.Muthukumar, C.T.Chang, S.Jonas, O.Weichenrieder, E.Izaurralde. Structure of the DCP2-DCP1 Mrna-Decapping Complex in the Activated Conformation. Nat.Struct.Mol.Biol. V. 23 574 2016.
ISSN: ESSN 1545-9985
PubMed: 27183195
DOI: 10.1038/NSMB.3232