Magnesium in PDB 5j7r: 2.5 Angstrom Crystal Structure of Putative Lipoprotein From Clostridium Perfringens

The structure of 2.5 Angstrom Crystal Structure of Putative Lipoprotein From Clostridium Perfringens, PDB code: 5j7r was solved by G.Minasov, L.Shuvalova, O.Kiryukhina, K.Flores, S.Shatsman, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.55 / 2.50
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	118.212, 118.212, 71.836, 90.00, 90.00, 120.00
R / Rfree (%)	21.9 / 26.8

The structure of 2.5 Angstrom Crystal Structure of Putative Lipoprotein From Clostridium Perfringens also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Magnesium atom in the 2.5 Angstrom Crystal Structure of Putative Lipoprotein From Clostridium Perfringens (pdb code 5j7r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the 2.5 Angstrom Crystal Structure of Putative Lipoprotein From Clostridium Perfringens, PDB code: 5j7r:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the 2.5 Angstrom Crystal Structure of Putative Lipoprotein From Clostridium Perfringens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 2.5 Angstrom Crystal Structure of Putative Lipoprotein From Clostridium Perfringens within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:61.7 occ:1.00 O C:HOH213 1.9 55.4 1.0 O A:HOH301 2.0 63.8 1.0 O C:HOH201 2.3 58.0 1.0 OD2 A:ASP70 2.3 55.3 1.0 O D:HOH210 2.5 76.2 1.0 O A:HOH310 2.5 56.5 1.0 CG A:ASP70 3.4 52.8 1.0 O D:HOH204 3.6 68.7 1.0 OD1 A:ASP70 3.8 54.6 1.0 OG D:SER92 4.2 58.9 1.0 O A:ILE108 4.4 74.4 1.0 OE2 C:GLU63 4.4 0.2 1.0 OD1 A:ASP44 4.5 60.7 1.0 CB A:ASP70 4.6 49.8 1.0 OE1 A:GLU73 4.7 57.0 1.0 CB A:ILE108 4.9 60.3 1.0 O A:HOH313 5.0 55.7 1.0 CD A:GLU73 5.0 55.3 1.0

Magnesium binding site 2 out of 2 in the 2.5 Angstrom Crystal Structure of Putative Lipoprotein From Clostridium Perfringens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 2.5 Angstrom Crystal Structure of Putative Lipoprotein From Clostridium Perfringens within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:60.5 occ:1.00 O B:HOH302 2.0 52.0 1.0 O B:HOH312 2.1 69.3 1.0 O B:HOH321 2.1 54.6 1.0 O B:HOH311 2.2 52.9 1.0 OD2 B:ASP70 2.2 54.2 1.0 O B:HOH324 2.3 74.7 1.0 CG B:ASP70 3.3 52.1 1.0 OD1 B:ASP70 3.7 54.3 1.0 O B:ILE108 4.3 59.3 1.0 OD1 B:ASP44 4.4 68.1 1.0 O B:HOH320 4.5 63.6 1.0 CB B:ASP70 4.5 49.5 1.0 O B:HOH325 4.5 85.5 1.0 OE2 B:GLU73 4.6 67.2 1.0 O B:HOH319 4.6 70.7 1.0 CB B:ILE108 4.8 53.9 1.0 CD B:GLU73 4.8 58.2 1.0 CG B:GLU73 4.9 52.2 1.0 CG2 B:ILE108 5.0 53.9 1.0

G.Minasov, L.Shuvalova, O.Kiryukhina, K.Flores, S.Shatsman, K.Kwon, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.5 Angstrom Crystal Structure of Putative Lipoprotein From Clostridium Perfringens To Be Published.