Magnesium in PDB 5j8p: LYS27-Linked Diubiquitin

The structure of LYS27-Linked Diubiquitin, PDB code: 5j8p was solved by M.Pan, S.Gao, Y.Zheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.71 / 1.55
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	44.828, 63.411, 52.844, 90.00, 109.16, 90.00
R / Rfree (%)	23.4 / 29.5

The binding sites of Magnesium atom in the LYS27-Linked Diubiquitin (pdb code 5j8p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the LYS27-Linked Diubiquitin, PDB code: 5j8p:

Magnesium binding site 1 out of 1 in the LYS27-Linked Diubiquitin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of LYS27-Linked Diubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:25.5 occ:1.00 H A:THR66 2.2 13.8 1.0 O A:HOH234 2.6 17.1 1.0 O B:HOH229 2.7 21.4 1.0 HA A:SER65 2.7 20.9 1.0 HE1 A:PHE45 2.8 20.4 1.0 O B:DTH66 2.9 16.2 1.0 N A:THR66 3.0 11.5 1.0 HB2 B:DHI68 3.2 20.4 1.0 HB A:THR66 3.3 12.4 1.0 HG1 A:THR66 3.5 17.2 1.0 CA A:SER65 3.5 17.4 1.0 HB3 A:SER65 3.6 18.7 1.0 C B:DTH66 3.7 15.7 1.0 CE1 A:PHE45 3.7 17.0 1.0 C A:SER65 3.7 12.0 1.0 O A:THR66 3.8 14.6 1.0 CB A:THR66 3.9 10.4 1.0 C B:DLE67 3.9 15.6 1.0 CA A:THR66 3.9 10.5 1.0 HZ A:PHE45 4.0 21.2 1.0 N B:DHI68 4.0 13.3 1.0 CB A:SER65 4.0 15.6 1.0 OG1 A:THR66 4.1 14.3 1.0 CB B:DHI68 4.1 17.0 1.0 O B:DLE67 4.1 14.1 1.0 CA B:DLE67 4.2 13.8 1.0 H B:DHI68 4.2 15.9 1.0 CB B:DTH66 4.2 18.0 1.0 HD1 B:DPN45 4.3 17.2 1.0 N B:DLE67 4.3 12.6 1.0 CZ A:PHE45 4.3 17.6 1.0 C A:THR66 4.3 11.7 1.0 CG2 B:DTH66 4.4 16.8 1.0 HA B:DHI68 4.4 12.8 1.0 HD1 B:DHI68 4.4 32.6 1.0 CA B:DHI68 4.4 10.7 1.0 OG A:SER65 4.4 17.5 1.0 O A:GLU64 4.5 20.8 1.0 CA B:DTH66 4.6 17.9 1.0 HB3 B:DLY6 4.7 20.6 1.0 N A:SER65 4.7 15.1 1.0 HA A:THR66 4.7 12.7 1.0 HB3 B:DHI68 4.7 20.4 1.0 CD1 A:PHE45 4.8 14.5 1.0 ND1 B:DHI68 4.8 27.2 1.0 CG B:DHI68 4.8 15.6 1.0 HD1 A:PHE45 4.8 17.4 1.0 O B:DIL44 4.9 14.8 1.0 O A:SER65 4.9 18.1 1.0 HB2 A:SER65 4.9 18.7 1.0 HG A:SER65 5.0 21.0 1.0

M.Pan, S.Gao, Y.Zheng. Structure of LYS27-Linked Diubiquitin To Be Published.