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Magnesium in PDB 5j9c: Crystal Structure of Peroxiredoxin Asp F3 C31S/C61S Variant

Enzymatic activity of Crystal Structure of Peroxiredoxin Asp F3 C31S/C61S Variant

All present enzymatic activity of Crystal Structure of Peroxiredoxin Asp F3 C31S/C61S Variant:
1.11.1.15;

Protein crystallography data

The structure of Crystal Structure of Peroxiredoxin Asp F3 C31S/C61S Variant, PDB code: 5j9c was solved by K.P.Bzymek, J.C.Williams, T.B.Hong, K.Bagramyan, M.Kalkum, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.56 / 1.96
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.860, 68.100, 90.960, 90.00, 90.00, 90.00
R / Rfree (%) 15.3 / 19

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Peroxiredoxin Asp F3 C31S/C61S Variant (pdb code 5j9c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Peroxiredoxin Asp F3 C31S/C61S Variant, PDB code: 5j9c:

Magnesium binding site 1 out of 1 in 5j9c

Go back to Magnesium Binding Sites List in 5j9c
Magnesium binding site 1 out of 1 in the Crystal Structure of Peroxiredoxin Asp F3 C31S/C61S Variant


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Peroxiredoxin Asp F3 C31S/C61S Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:42.5
occ:1.00
O A:HOH351 2.0 25.1 1.0
O A:HOH422 2.1 41.2 1.0
O A:HOH379 2.1 44.4 1.0
OE2 A:GLU157 2.1 17.9 1.0
CD A:GLU157 3.2 20.9 1.0
OE1 A:GLU157 3.6 19.1 1.0
O A:HOH378 3.8 29.1 1.0
CG A:GLU157 4.5 15.9 1.0
CZ A:PHE158 4.7 15.7 1.0
CE1 A:PHE158 5.0 16.1 1.0

Reference:

F.Hillmann, K.Bagramyan, M.Straburger, T.Heinekamp, T.B.Hong, K.P.Bzymek, J.C.Williams, A.A.Brakhage, M.Kalkum. The Crystal Structure of Peroxiredoxin Asp F3 Provides Mechanistic Insight Into Oxidative Stress Resistance and Virulence of Aspergillus Fumigatus. Sci Rep V. 6 33396 2016.
ISSN: ESSN 2045-2322
PubMed: 27624005
DOI: 10.1038/SREP33396
Page generated: Sun Sep 29 17:39:36 2024

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