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Magnesium in PDB 5jbg: Crystal Structure of Chicken LGP2 with 5'Ppp 26-Mer Hairpin Rna with 3' Gg Overhang and Adp-ALF4-MG2+ at 2.0 A Resolution.

Protein crystallography data

The structure of Crystal Structure of Chicken LGP2 with 5'Ppp 26-Mer Hairpin Rna with 3' Gg Overhang and Adp-ALF4-MG2+ at 2.0 A Resolution., PDB code: 5jbg was solved by S.Cusack, E.Uchikawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 76.27 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 69.860, 97.430, 122.580, 90.00, 90.00, 90.00
R / Rfree (%) 21.8 / 25.5

Other elements in 5jbg:

The structure of Crystal Structure of Chicken LGP2 with 5'Ppp 26-Mer Hairpin Rna with 3' Gg Overhang and Adp-ALF4-MG2+ at 2.0 A Resolution. also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Aluminium (Al) 1 atom
Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Chicken LGP2 with 5'Ppp 26-Mer Hairpin Rna with 3' Gg Overhang and Adp-ALF4-MG2+ at 2.0 A Resolution. (pdb code 5jbg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Chicken LGP2 with 5'Ppp 26-Mer Hairpin Rna with 3' Gg Overhang and Adp-ALF4-MG2+ at 2.0 A Resolution., PDB code: 5jbg:

Magnesium binding site 1 out of 1 in 5jbg

Go back to Magnesium Binding Sites List in 5jbg
Magnesium binding site 1 out of 1 in the Crystal Structure of Chicken LGP2 with 5'Ppp 26-Mer Hairpin Rna with 3' Gg Overhang and Adp-ALF4-MG2+ at 2.0 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Chicken LGP2 with 5'Ppp 26-Mer Hairpin Rna with 3' Gg Overhang and Adp-ALF4-MG2+ at 2.0 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg704

b:25.6
occ:1.00
O A:HOH835 2.0 27.0 1.0
F1 A:ALF703 2.0 26.6 1.0
O3B A:ADP702 2.0 25.9 1.0
O A:HOH931 2.1 25.1 1.0
O A:HOH814 2.1 21.6 1.0
F4 A:ALF703 2.4 27.3 1.0
AL A:ALF703 3.0 24.8 1.0
PB A:ADP702 3.2 26.1 1.0
O1B A:ADP702 3.5 24.5 1.0
O A:HOH958 3.5 28.7 1.0
OE2 A:GLU132 3.8 26.9 1.0
O A:HOH805 3.8 19.4 1.0
OG1 A:THR31 3.9 27.8 1.0
OD1 A:ASP131 4.0 29.2 1.0
CA A:GLY442 4.0 25.5 1.0
O1A A:ADP702 4.1 27.1 1.0
O3A A:ADP702 4.2 28.0 1.0
OD2 A:ASP131 4.3 28.4 1.0
F3 A:ALF703 4.3 26.0 1.0
O2B A:ADP702 4.3 26.2 1.0
O A:GLY442 4.3 25.7 1.0
O2A A:ADP702 4.4 27.6 1.0
PA A:ADP702 4.4 27.5 1.0
CE1 A:HIS63 4.5 28.9 1.0
F2 A:ALF703 4.5 23.8 1.0
CG A:ASP131 4.6 27.3 1.0
C A:GLY442 4.7 24.1 1.0
CE A:LYS30 4.7 24.7 1.0
CD A:GLU132 4.8 26.9 1.0
NE2 A:HIS63 4.8 27.7 1.0
N A:GLY442 4.8 25.6 1.0
NH2 A:ARG471 4.9 30.8 1.0

Reference:

E.Uchikawa, M.Lethier, H.Malet, J.Brunel, D.Gerlier, S.Cusack. Structural Analysis of Dsrna Binding to Anti-Viral Pattern Recognition Receptors LGP2 and MDA5. Mol.Cell V. 62 586 2016.
ISSN: ISSN 1097-2765
PubMed: 27203181
DOI: 10.1016/J.MOLCEL.2016.04.021
Page generated: Mon Dec 14 20:33:08 2020

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