Magnesium in PDB 5jbh: Cryo-Em Structure of A Full Archaeal Ribosomal Translation Initiation Complex in the P-in Conformation

The structure of Cryo-Em Structure of A Full Archaeal Ribosomal Translation Initiation Complex in the P-in Conformation also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of A Full Archaeal Ribosomal Translation Initiation Complex in the P-in Conformation (pdb code 5jbh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of A Full Archaeal Ribosomal Translation Initiation Complex in the P-in Conformation, PDB code: 5jbh:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of A Full Archaeal Ribosomal Translation Initiation Complex in the P-in Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of A Full Archaeal Ribosomal Translation Initiation Complex in the P-in Conformation within 5.0Å range: probe atom residue distance (Å) B Occ 7:Mg501 b:40.0 occ:1.00 OG1 7:THR23 2.7 40.0 1.0 O2A 7:GNP502 2.9 40.0 1.0 O1B 7:GNP502 2.9 40.0 1.0 OG1 7:THR46 3.0 40.0 1.0 N 7:THR46 3.0 40.0 1.0 N3B 7:GNP502 3.1 40.0 1.0 CB 7:THR46 3.2 40.0 1.0 O1G 7:GNP502 3.2 40.0 1.0 CB 7:THR23 3.3 40.0 1.0 CE 7:LYS36 3.3 40.0 1.0 PB 7:GNP502 3.5 40.0 1.0 CA 7:THR46 3.6 40.0 1.0 PG 7:GNP502 3.6 40.0 1.0 PA 7:GNP502 3.7 40.0 1.0 NZ 7:LYS36 3.8 40.0 1.0 O1A 7:GNP502 3.8 40.0 1.0 CG2 7:THR23 3.9 40.0 1.0 C 7:MET45 4.0 40.0 1.0 O2G 7:GNP502 4.0 40.0 1.0 O3A 7:GNP502 4.0 40.0 1.0 CD 7:LYS36 4.2 40.0 1.0 CB 7:MET45 4.2 40.0 1.0 CG 7:LYS36 4.2 40.0 1.0 CA 7:MET45 4.3 40.0 1.0 CZ2 7:TRP33 4.4 40.0 1.0 OD2 7:ASP93 4.4 40.0 1.0 CA 7:THR23 4.6 40.0 1.0 CG2 7:THR46 4.7 40.0 1.0 OG1 7:THR34 4.7 40.0 1.0 CH2 7:TRP33 4.8 40.0 1.0 N 7:THR23 4.8 40.0 1.0 O2B 7:GNP502 4.9 40.0 1.0 C 7:THR46 5.0 40.0 1.0

P.D.Coureux, C.Lazennec-Schurdevin, A.Monestier, E.Larquet, L.Cladiere, B.P.Klaholz, E.Schmitt, Y.Mechulam. Cryo-Em Study of Start Codon Selection During Archaeal Translation Initiation. Nat Commun V. 7 13366 2016.
ISSN: ESSN 2041-1723
PubMed: 27819266
DOI: 10.1038/NCOMMS13366