Magnesium in PDB 5jco: Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin (pdb code 5jco). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin, PDB code: 5jco:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in the Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg502 b:13.1 occ:1.00 O2G K:G2P501 2.7 84.5 1.0 O1B K:G2P501 3.0 71.6 1.0 OE1 K:GLU69 3.1 0.2 1.0 C3A K:G2P501 3.4 73.9 1.0 OE1 K:GLN11 3.5 0.4 1.0 CB K:GLN11 3.6 78.7 1.0 PB K:G2P501 3.7 73.0 1.0 PG K:G2P501 3.9 82.4 1.0 O1A K:G2P501 3.9 76.1 1.0 O2A K:G2P501 4.0 73.2 1.0 PA K:G2P501 4.0 75.8 1.0 CD K:GLN11 4.1 0.7 1.0 O1G K:G2P501 4.2 79.7 1.0 N K:GLN11 4.3 71.4 1.0 O3B K:G2P501 4.3 77.0 1.0 CD K:GLU69 4.3 0.8 1.0 CG K:GLN11 4.4 88.2 1.0 CA K:GLN11 4.5 73.5 1.0 OD2 K:ASP67 4.6 68.1 1.0 OD1 K:ASP67 4.8 67.8 1.0 CG2 K:THR72 4.8 86.5 1.0 NE2 K:GLN11 4.9 0.9 1.0 CB K:GLU69 4.9 0.8 1.0

Magnesium binding site 2 out of 12 in the Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg502 b:7.5 occ:1.00 O3G H:GTP501 2.4 70.0 1.0 O2B H:GTP501 2.6 84.7 1.0 OE1 H:GLN11 3.1 49.5 1.0 CB H:GLN11 3.7 45.8 1.0 PG H:GTP501 3.7 70.5 1.0 PB H:GTP501 3.8 86.7 1.0 OE1 H:GLU71 3.8 0.7 1.0 O3B H:GTP501 3.9 77.0 1.0 O2A H:GTP501 3.9 94.7 1.0 CD H:GLN11 4.1 48.4 1.0 OD1 H:ASP69 4.1 77.7 1.0 OD2 H:ASP98 4.3 0.4 1.0 N H:GLN11 4.3 47.2 1.0 O1G H:GTP501 4.3 68.2 1.0 CA H:GLN11 4.4 47.0 1.0 CG H:GLN11 4.5 46.6 1.0 NZ D:LYS252 4.5 0.4 1.0 OD2 H:ASP69 4.5 69.5 1.0 CG H:ASP98 4.6 0.9 1.0 O3A H:GTP501 4.7 90.5 1.0 CG H:ASP69 4.8 71.8 1.0 OD1 H:ASP98 4.8 0.6 1.0 CG1 H:VAL74 4.9 76.3 1.0 O2G H:GTP501 4.9 72.9 1.0 PA H:GTP501 4.9 95.7 1.0 O1B H:GTP501 5.0 85.8 1.0

Magnesium binding site 3 out of 12 in the Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg502 b:8.2 occ:1.00 O2G I:G2P501 2.7 73.2 1.0 OE1 I:GLU69 3.0 0.3 1.0 O1B I:G2P501 3.1 61.8 1.0 C3A I:G2P501 3.5 64.5 1.0 OE1 I:GLN11 3.5 96.5 1.0 CB I:GLN11 3.6 71.3 1.0 PB I:G2P501 3.8 63.2 1.0 PG I:G2P501 3.9 71.5 1.0 O1A I:G2P501 4.0 65.3 1.0 PA I:G2P501 4.1 65.6 1.0 O2A I:G2P501 4.1 63.5 1.0 CD I:GLN11 4.1 90.8 1.0 CD I:GLU69 4.2 0.8 1.0 O1G I:G2P501 4.2 69.2 1.0 N I:GLN11 4.3 65.0 1.0 O3B I:G2P501 4.4 66.7 1.0 CG I:GLN11 4.5 79.3 1.0 CA I:GLN11 4.5 66.9 1.0 OD2 I:ASP67 4.6 64.9 1.0 OD1 I:ASP67 4.7 64.0 1.0 CG2 I:THR72 4.8 81.2 1.0 CB I:GLU69 4.8 0.7 1.0 NE2 I:GLN11 5.0 95.6 1.0 CG I:GLU69 5.0 0.2 1.0

Magnesium binding site 4 out of 12 in the Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:5.0 occ:1.00 O3G E:GTP501 2.5 57.7 1.0 O2B E:GTP501 2.6 67.4 1.0 OE1 E:GLN11 3.2 41.1 1.0 CB E:GLN11 3.7 37.4 1.0 OE1 E:GLU71 3.7 0.4 1.0 PG E:GTP501 3.8 58.4 1.0 PB E:GTP501 3.9 68.7 1.0 O3B E:GTP501 4.0 62.0 1.0 OD1 E:ASP69 4.1 70.3 1.0 O2A E:GTP501 4.1 69.7 1.0 CD E:GLN11 4.2 39.8 1.0 OD2 E:ASP98 4.2 0.1 1.0 N E:GLN11 4.3 38.0 1.0 O1G E:GTP501 4.4 57.2 1.0 NZ C:LYS252 4.5 93.7 1.0 OD2 E:ASP69 4.5 62.2 1.0 CA E:GLN11 4.5 38.4 1.0 CG E:GLN11 4.5 38.1 1.0 CG E:ASP98 4.6 0.8 1.0 CG E:ASP69 4.8 64.2 1.0 OD1 E:ASP98 4.8 0.0 1.0 O3A E:GTP501 4.8 69.4 1.0 CG1 E:VAL74 4.9 61.0 1.0 CD E:GLU71 4.9 0.2 1.0 O2G E:GTP501 5.0 60.5 1.0 OG1 E:THR73 5.0 84.1 1.0

Magnesium binding site 5 out of 12 in the Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg502 b:14.6 occ:1.00 O2G J:G2P501 2.6 92.3 1.0 O1B J:G2P501 3.1 81.5 1.0 OE1 J:GLU69 3.2 1.0 1.0 C3A J:G2P501 3.4 84.5 1.0 OE1 J:GLN11 3.5 0.9 1.0 CB J:GLN11 3.5 85.4 1.0 PB J:G2P501 3.8 83.1 1.0 O1A J:G2P501 3.8 88.3 1.0 PG J:G2P501 3.9 90.8 1.0 PA J:G2P501 3.9 88.0 1.0 O2A J:G2P501 4.0 85.2 1.0 CD J:GLN11 4.0 0.1 1.0 O1G J:G2P501 4.3 88.1 1.0 N J:GLN11 4.3 80.3 1.0 O3B J:G2P501 4.3 86.2 1.0 CD J:GLU69 4.4 0.1 1.0 CG J:GLN11 4.4 93.2 1.0 CA J:GLN11 4.5 81.7 1.0 OD2 J:ASP67 4.7 78.4 1.0 NE2 J:GLN11 4.8 0.6 1.0 CG2 J:THR72 4.9 94.8 1.0 OD1 J:ASP67 4.9 76.9 1.0

Magnesium binding site 6 out of 12 in the Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:10.5 occ:1.00 O2G C:G2P501 2.7 79.4 1.0 OE1 C:GLU69 3.0 0.8 1.0 O1B C:G2P501 3.1 71.3 1.0 OE1 C:GLN11 3.5 0.0 1.0 C3A C:G2P501 3.5 74.8 1.0 CB C:GLN11 3.6 78.1 1.0 PB C:G2P501 3.8 73.1 1.0 PG C:G2P501 3.9 78.3 1.0 O1A C:G2P501 4.0 77.2 1.0 CD C:GLN11 4.0 96.6 1.0 PA C:G2P501 4.1 77.4 1.0 O2A C:G2P501 4.2 74.9 1.0 CD C:GLU69 4.2 0.5 1.0 O1G C:G2P501 4.3 76.1 1.0 N C:GLN11 4.4 72.7 1.0 O3B C:G2P501 4.4 75.0 1.0 CG C:GLN11 4.5 85.8 1.0 CA C:GLN11 4.5 74.0 1.0 OD2 C:ASP67 4.7 74.7 1.0 CG2 C:THR72 4.8 89.5 1.0 OD1 C:ASP67 4.9 73.0 1.0 NE2 C:GLN11 4.9 0.6 1.0 CB C:GLU69 4.9 0.4 1.0

Magnesium binding site 7 out of 12 in the Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:14.7 occ:1.00 O2G D:G2P501 2.6 91.4 1.0 O1B D:G2P501 3.0 81.7 1.0 OE1 D:GLU69 3.1 0.8 1.0 C3A D:G2P501 3.4 83.9 1.0 OE1 D:GLN11 3.5 0.8 1.0 CB D:GLN11 3.6 84.6 1.0 PB D:G2P501 3.7 83.1 1.0 PG D:G2P501 3.9 90.4 1.0 O1A D:G2P501 3.9 86.5 1.0 O2A D:G2P501 4.0 83.4 1.0 PA D:G2P501 4.0 86.4 1.0 CD D:GLN11 4.1 0.3 1.0 O1G D:G2P501 4.2 87.5 1.0 N D:GLN11 4.3 79.2 1.0 O3B D:G2P501 4.3 86.1 1.0 CD D:GLU69 4.3 0.2 1.0 CG D:GLN11 4.5 92.8 1.0 CA D:GLN11 4.5 80.5 1.0 OD2 D:ASP67 4.6 79.4 1.0 OD1 D:ASP67 4.8 77.7 1.0 CG2 D:THR72 4.9 91.3 1.0 CB D:GLU69 4.9 0.1 1.0 NE2 D:GLN11 4.9 0.9 1.0

Magnesium binding site 8 out of 12 in the Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg502 b:6.6 occ:1.00 O3G F:GTP501 2.4 65.8 1.0 O2B F:GTP501 2.5 79.4 1.0 OE1 F:GLN11 3.1 46.0 1.0 CB F:GLN11 3.6 43.2 1.0 PG F:GTP501 3.6 66.1 1.0 PB F:GTP501 3.7 81.8 1.0 O2A F:GTP501 3.8 89.7 1.0 O3B F:GTP501 3.9 72.4 1.0 OE1 F:GLU71 3.9 0.4 1.0 CD F:GLN11 4.1 45.0 1.0 OD1 F:ASP69 4.2 73.7 1.0 N F:GLN11 4.2 44.6 1.0 O1G F:GTP501 4.2 64.3 1.0 OD2 F:ASP98 4.2 0.5 1.0 NZ L:LYS252 4.4 99.1 1.0 CA F:GLN11 4.4 44.8 1.0 CG F:GLN11 4.5 43.6 1.0 CG F:ASP98 4.6 0.6 1.0 OD2 F:ASP69 4.6 64.9 1.0 O3A F:GTP501 4.6 85.7 1.0 OD1 F:ASP98 4.8 0.7 1.0 PA F:GTP501 4.8 90.8 1.0 CG F:ASP69 4.9 67.2 1.0 O2G F:GTP501 4.9 67.8 1.0 O1B F:GTP501 4.9 80.8 1.0 CG1 F:VAL74 5.0 74.1 1.0

Magnesium binding site 9 out of 12 in the Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:4.6 occ:1.00 O3G A:GTP501 2.4 56.0 1.0 O2B A:GTP501 2.6 71.6 1.0 OE1 A:GLN11 3.2 44.0 1.0 PG A:GTP501 3.7 57.1 1.0 CB A:GLN11 3.7 40.5 1.0 OE1 A:GLU71 3.8 0.0 1.0 PB A:GTP501 3.9 73.1 1.0 O3B A:GTP501 4.0 63.4 1.0 O2A A:GTP501 4.1 76.9 1.0 OD1 A:ASP69 4.1 76.2 1.0 CD A:GLN11 4.2 42.5 1.0 OD2 A:ASP98 4.2 0.8 1.0 N A:GLN11 4.3 42.2 1.0 O1G A:GTP501 4.4 55.5 1.0 NZ I:LYS252 4.5 91.4 1.0 CA A:GLN11 4.5 42.1 1.0 OD2 A:ASP69 4.5 67.4 1.0 CG A:GLN11 4.5 40.9 1.0 CG A:ASP98 4.6 0.7 1.0 OD1 A:ASP98 4.8 0.3 1.0 CG A:ASP69 4.8 69.5 1.0 O3A A:GTP501 4.8 75.2 1.0 O2G A:GTP501 4.9 59.0 1.0 CG1 A:VAL74 4.9 64.5 1.0 CD A:GLU71 4.9 0.4 1.0

Magnesium binding site 10 out of 12 in the Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:6.2 occ:1.00 O3G B:GTP501 2.4 64.7 1.0 O2B B:GTP501 2.6 79.7 1.0 OE1 B:GLN11 3.2 47.5 1.0 PG B:GTP501 3.7 65.3 1.0 CB B:GLN11 3.7 43.4 1.0 OE1 B:GLU71 3.8 0.2 1.0 PB B:GTP501 3.8 81.2 1.0 O3B B:GTP501 3.9 71.6 1.0 O2A B:GTP501 3.9 87.1 1.0 OD1 B:ASP69 4.1 73.8 1.0 CD B:GLN11 4.2 46.0 1.0 OD2 B:ASP98 4.2 0.6 1.0 N B:GLN11 4.3 45.0 1.0 O1G B:GTP501 4.3 63.2 1.0 CA B:GLN11 4.4 44.8 1.0 NZ K:LYS252 4.5 0.4 1.0 CG B:GLN11 4.5 44.1 1.0 OD2 B:ASP69 4.5 65.8 1.0 CG B:ASP98 4.6 0.5 1.0 O3A B:GTP501 4.8 84.0 1.0 OD1 B:ASP98 4.8 0.6 1.0 CG B:ASP69 4.8 68.0 1.0 O2G B:GTP501 4.9 67.7 1.0 CG1 B:VAL74 4.9 69.5 1.0 PA B:GTP501 4.9 88.0 1.0

A.Vemu, J.Atherton, J.O.Spector, A.Szyk, C.A.Moores, A.Roll-Mecak. Structure and Dynamics of Single-Isoform Recombinant Neuronal Human Tubulin. J.Biol.Chem. V. 291 12907 2016.
ISSN: ESSN 1083-351X
PubMed: 27129203
DOI: 10.1074/JBC.C116.731133