Magnesium in PDB 5jlf: Structure of the F-Actin-Tropomyosin Complex (Reprocessed)

The binding sites of Magnesium atom in the Structure of the F-Actin-Tropomyosin Complex (Reprocessed) (pdb code 5jlf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Structure of the F-Actin-Tropomyosin Complex (Reprocessed), PDB code: 5jlf:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Structure of the F-Actin-Tropomyosin Complex (Reprocessed)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the F-Actin-Tropomyosin Complex (Reprocessed) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:23.8 occ:1.00 O1B A:ADP401 2.4 67.6 1.0 OE1 A:GLN137 3.1 0.8 1.0 O3B A:ADP401 3.3 62.9 1.0 PB A:ADP401 3.3 64.3 1.0 NE2 A:GLN137 3.6 0.8 1.0 CD A:GLN137 3.6 100.0 1.0 OD1 A:ASP154 3.7 86.8 1.0 O1A A:ADP401 3.8 60.4 1.0 O3A A:ADP401 4.0 59.3 1.0 OD2 A:ASP154 4.1 87.3 1.0 CG A:ASP154 4.3 84.8 1.0 CA A:GLY156 4.4 63.3 1.0 CG2 A:VAL339 4.5 73.9 1.0 OD2 A:ASP11 4.5 98.2 1.0 PA A:ADP401 4.5 57.4 1.0 O2B A:ADP401 4.7 63.9 1.0 OD1 A:ASP11 4.7 0.1 1.0 NZ A:LYS18 4.8 79.3 1.0 CG A:GLN137 4.9 89.0 1.0 N A:GLY156 4.9 60.4 1.0

Magnesium binding site 2 out of 5 in the Structure of the F-Actin-Tropomyosin Complex (Reprocessed)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the F-Actin-Tropomyosin Complex (Reprocessed) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:28.2 occ:1.00 O1B B:ADP401 2.4 73.8 1.0 O3B B:ADP401 3.1 76.0 1.0 OE1 B:GLN137 3.1 0.3 1.0 PB B:ADP401 3.2 75.7 1.0 NE2 B:GLN137 3.6 0.2 1.0 CD B:GLN137 3.6 0.2 1.0 OD1 B:ASP154 3.7 0.3 1.0 O1A B:ADP401 3.8 66.3 1.0 O3A B:ADP401 3.9 72.6 1.0 OD2 B:ASP154 4.2 0.8 1.0 CA B:GLY156 4.2 76.0 1.0 CG B:ASP154 4.3 99.0 1.0 PA B:ADP401 4.5 68.9 1.0 CG2 B:VAL339 4.6 89.9 1.0 O2B B:ADP401 4.6 70.7 1.0 OD2 B:ASP11 4.7 0.8 1.0 OD1 B:ASP11 4.8 0.0 1.0 N B:GLY156 4.8 71.1 1.0 NZ B:LYS18 4.9 0.8 1.0 CG B:GLN137 5.0 96.6 1.0

Magnesium binding site 3 out of 5 in the Structure of the F-Actin-Tropomyosin Complex (Reprocessed)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the F-Actin-Tropomyosin Complex (Reprocessed) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:48.0 occ:1.00 O1B C:ADP401 2.4 91.6 1.0 OE1 C:GLN137 3.0 0.9 1.0 O3B C:ADP401 3.0 87.2 1.0 PB C:ADP401 3.2 89.4 1.0 NE2 C:GLN137 3.5 0.7 1.0 CD C:GLN137 3.6 0.3 1.0 OD1 C:ASP154 3.7 85.4 1.0 O1A C:ADP401 3.8 80.0 1.0 O3A C:ADP401 3.9 81.0 1.0 OD2 C:ASP154 4.2 92.7 1.0 CA C:GLY156 4.3 96.0 1.0 CG C:ASP154 4.4 89.9 1.0 PA C:ADP401 4.5 78.3 1.0 O2B C:ADP401 4.6 87.0 1.0 CG2 C:VAL339 4.6 0.9 1.0 OD2 C:ASP11 4.7 0.9 1.0 OD1 C:ASP11 4.8 0.2 1.0 N C:GLY156 4.8 91.3 1.0 NZ C:LYS18 4.9 0.1 1.0 CG C:GLN137 4.9 0.6 1.0

Magnesium binding site 4 out of 5 in the Structure of the F-Actin-Tropomyosin Complex (Reprocessed)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of the F-Actin-Tropomyosin Complex (Reprocessed) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:30.1 occ:1.00 O1B D:ADP401 2.4 62.6 1.0 OE1 D:GLN137 3.1 0.0 1.0 O3B D:ADP401 3.1 59.8 1.0 PB D:ADP401 3.3 59.3 1.0 NE2 D:GLN137 3.6 96.7 1.0 CD D:GLN137 3.6 92.5 1.0 OD1 D:ASP154 3.7 64.8 1.0 O1A D:ADP401 3.8 53.9 1.0 O3A D:ADP401 4.0 54.8 1.0 OD2 D:ASP154 4.1 63.8 1.0 CA D:GLY156 4.2 66.3 1.0 CG D:ASP154 4.3 63.8 1.0 PA D:ADP401 4.5 52.1 1.0 CG2 D:VAL339 4.6 79.0 1.0 O2B D:ADP401 4.6 61.2 1.0 OD2 D:ASP11 4.7 0.9 1.0 N D:GLY156 4.8 59.9 1.0 OD1 D:ASP11 4.8 0.7 1.0 NZ D:LYS18 4.9 88.8 1.0 CG D:GLN137 5.0 80.4 1.0 CA D:GLY301 5.0 56.6 1.0

Magnesium binding site 5 out of 5 in the Structure of the F-Actin-Tropomyosin Complex (Reprocessed)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of the F-Actin-Tropomyosin Complex (Reprocessed) within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:39.3 occ:1.00 O1B E:ADP401 2.4 58.6 1.0 O3B E:ADP401 3.1 60.3 1.0 OE1 E:GLN137 3.1 0.2 1.0 PB E:ADP401 3.2 59.0 1.0 NE2 E:GLN137 3.6 0.6 1.0 CD E:GLN137 3.6 0.2 1.0 O1A E:ADP401 3.8 53.6 1.0 OD1 E:ASP154 3.8 0.3 1.0 O3A E:ADP401 4.0 54.8 1.0 OD2 E:ASP154 4.2 99.4 1.0 CA E:GLY156 4.3 68.4 1.0 CG E:ASP154 4.4 97.0 1.0 PA E:ADP401 4.5 53.7 1.0 CG2 E:VAL339 4.6 72.8 1.0 OD2 E:ASP11 4.6 0.0 1.0 O2B E:ADP401 4.6 54.8 1.0 OD1 E:ASP11 4.7 0.1 1.0 NZ E:LYS18 4.8 93.1 1.0 N E:GLY156 4.9 66.0 1.0 CG E:GLN137 4.9 99.5 1.0

J.V.Ecken, S.M.Heissler, S.Pathan-Chhatbar, D.J.Manstein, S.Raunser. Cryo-Em Structure of A Human Cytoplasmic Actomyosin Complex at Near-Atomic Resolution. Nature V. 534 724 2016.
ISSN: ESSN 1476-4687
PubMed: 27324845
DOI: 10.1038/NATURE18295