Magnesium in PDB 5jlh: Cryo-Em Structure of A Human Cytoplasmic Actomyosin Complex at Near- Atomic Resolution

The binding sites of Magnesium atom in the Cryo-Em Structure of A Human Cytoplasmic Actomyosin Complex at Near- Atomic Resolution (pdb code 5jlh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of A Human Cytoplasmic Actomyosin Complex at Near- Atomic Resolution, PDB code: 5jlh:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of A Human Cytoplasmic Actomyosin Complex at Near- Atomic Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of A Human Cytoplasmic Actomyosin Complex at Near- Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:23.8 occ:1.00 O3B A:ADP401 2.1 0.2 1.0 O1B A:ADP401 2.2 0.8 1.0 PB A:ADP401 2.6 0.2 1.0 O3A A:ADP401 3.5 0.2 1.0 OE1 A:GLN136 3.9 0.6 1.0 OD2 A:ASP10 4.0 0.8 1.0 OD1 A:ASP153 4.0 0.6 1.0 O2B A:ADP401 4.1 0.5 1.0 CD A:GLN136 4.1 0.7 1.0 CA A:GLY155 4.2 98.4 1.0 O1A A:ADP401 4.2 0.8 1.0 CG2 A:VAL338 4.3 0.5 1.0 NE2 A:GLN136 4.3 0.6 1.0 OD1 A:ASP10 4.3 0.6 1.0 PA A:ADP401 4.5 0.1 1.0 CA A:GLY300 4.5 0.7 1.0 N A:GLY155 4.6 96.9 1.0 CG A:ASP10 4.6 0.2 1.0 NZ A:LYS17 4.7 0.2 1.0 CA A:GLY12 4.7 0.2 1.0 CG A:GLN136 4.8 0.6 1.0 N A:GLY12 5.0 0.3 1.0 CB A:VAL338 5.0 0.2 1.0

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of A Human Cytoplasmic Actomyosin Complex at Near- Atomic Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of A Human Cytoplasmic Actomyosin Complex at Near- Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:23.8 occ:1.00 O3B B:ADP401 2.1 0.2 1.0 O1B B:ADP401 2.2 0.8 1.0 PB B:ADP401 2.6 0.2 1.0 O3A B:ADP401 3.5 0.2 1.0 OE1 B:GLN136 3.9 0.5 1.0 OD1 B:ASP153 4.0 0.0 1.0 O2B B:ADP401 4.1 0.5 1.0 OD2 B:ASP10 4.1 0.4 1.0 CD B:GLN136 4.1 0.6 1.0 CA B:GLY155 4.2 0.3 1.0 O1A B:ADP401 4.2 0.8 1.0 CG2 B:VAL338 4.2 0.7 1.0 NE2 B:GLN136 4.3 0.2 1.0 OD1 B:ASP10 4.3 0.7 1.0 PA B:ADP401 4.5 0.1 1.0 CA B:GLY300 4.5 0.5 1.0 N B:GLY155 4.6 0.9 1.0 CG B:ASP10 4.7 1.0 1.0 NZ B:LYS17 4.7 0.4 1.0 CA B:GLY12 4.7 0.3 1.0 CG B:GLN136 4.9 0.8 1.0 CB B:VAL338 4.9 0.6 1.0 N B:GLY12 5.0 0.4 1.0

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of A Human Cytoplasmic Actomyosin Complex at Near- Atomic Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of A Human Cytoplasmic Actomyosin Complex at Near- Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:23.8 occ:1.00 O3B C:ADP401 2.1 0.2 1.0 O1B C:ADP401 2.2 0.8 1.0 PB C:ADP401 2.6 0.2 1.0 O3A C:ADP401 3.5 0.2 1.0 OE1 C:GLN136 3.9 0.7 1.0 OD1 C:ASP153 4.0 0.3 1.0 OD2 C:ASP10 4.0 0.1 1.0 O2B C:ADP401 4.1 0.5 1.0 CD C:GLN136 4.1 0.3 1.0 CA C:GLY155 4.2 0.8 1.0 O1A C:ADP401 4.2 0.8 1.0 CG2 C:VAL338 4.2 0.6 1.0 NE2 C:GLN136 4.3 0.9 1.0 OD1 C:ASP10 4.3 0.3 1.0 PA C:ADP401 4.5 0.1 1.0 CA C:GLY300 4.5 0.2 1.0 N C:GLY155 4.6 0.6 1.0 CG C:ASP10 4.7 0.6 1.0 NZ C:LYS17 4.7 0.8 1.0 CA C:GLY12 4.7 0.2 1.0 CG C:GLN136 4.9 0.7 1.0 CB C:VAL338 4.9 0.3 1.0 N C:GLY12 5.0 0.4 1.0

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of A Human Cytoplasmic Actomyosin Complex at Near- Atomic Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of A Human Cytoplasmic Actomyosin Complex at Near- Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:23.8 occ:1.00 O3B D:ADP401 2.1 0.2 1.0 O1B D:ADP401 2.2 0.8 1.0 PB D:ADP401 2.6 0.2 1.0 O3A D:ADP401 3.5 0.2 1.0 OE1 D:GLN136 3.9 0.7 1.0 OD1 D:ASP153 4.0 0.2 1.0 OD2 D:ASP10 4.0 0.7 1.0 O2B D:ADP401 4.1 0.5 1.0 CD D:GLN136 4.1 0.3 1.0 CA D:GLY155 4.2 0.2 1.0 O1A D:ADP401 4.2 0.8 1.0 CG2 D:VAL338 4.2 0.6 1.0 NE2 D:GLN136 4.3 0.8 1.0 OD1 D:ASP10 4.3 0.2 1.0 PA D:ADP401 4.5 0.1 1.0 CA D:GLY300 4.5 0.3 1.0 N D:GLY155 4.5 0.7 1.0 CG D:ASP10 4.7 0.2 1.0 NZ D:LYS17 4.7 0.7 1.0 CA D:GLY12 4.7 0.5 1.0 CG D:GLN136 4.9 0.5 1.0 CB D:VAL338 5.0 0.4 1.0 N D:GLY12 5.0 0.4 1.0

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of A Human Cytoplasmic Actomyosin Complex at Near- Atomic Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of A Human Cytoplasmic Actomyosin Complex at Near- Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:23.8 occ:1.00 O3B E:ADP401 2.1 0.2 1.0 O1B E:ADP401 2.2 0.8 1.0 PB E:ADP401 2.6 0.2 1.0 O3A E:ADP401 3.5 0.2 1.0 OE1 E:GLN136 3.9 0.5 1.0 OD2 E:ASP10 4.0 0.0 1.0 OD1 E:ASP153 4.0 0.8 1.0 O2B E:ADP401 4.1 0.5 1.0 CD E:GLN136 4.1 0.4 1.0 CA E:GLY155 4.2 0.2 1.0 O1A E:ADP401 4.2 0.8 1.0 CG2 E:VAL338 4.3 97.9 1.0 NE2 E:GLN136 4.3 0.7 1.0 OD1 E:ASP10 4.4 0.5 1.0 CA E:GLY300 4.5 96.4 1.0 PA E:ADP401 4.5 0.1 1.0 N E:GLY155 4.6 0.5 1.0 CG E:ASP10 4.7 0.2 1.0 NZ E:LYS17 4.7 0.9 1.0 CA E:GLY12 4.7 0.6 1.0 CG E:GLN136 4.9 0.7 1.0 CB E:VAL338 5.0 93.4 1.0 N E:GLY12 5.0 1.0 1.0

J.V.Ecken, S.M.Heissler, S.Pathan-Chhatbar, D.J.Manstein, S.Raunser. Cryo-Em Structure of A Human Cytoplasmic Actomyosin Complex at Near-Atomic Resolution. Nature V. 534 724 2016.
ISSN: ESSN 1476-4687
PubMed: 27324845
DOI: 10.1038/NATURE18295