Atomistry » Magnesium » PDB 5jp6-5k0n » 5jp6
Atomistry »
  Magnesium »
    PDB 5jp6-5k0n »
      5jp6 »

Magnesium in PDB 5jp6: Bdellovibrio Bacteriovorus Peptidoglycan Deacetylase BD3279

Protein crystallography data

The structure of Bdellovibrio Bacteriovorus Peptidoglycan Deacetylase BD3279, PDB code: 5jp6 was solved by A.L.Lovering, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 97.37 / 1.50
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 112.434, 112.434, 79.859, 90.00, 90.00, 120.00
R / Rfree (%) 14.5 / 16.7

Other elements in 5jp6:

The structure of Bdellovibrio Bacteriovorus Peptidoglycan Deacetylase BD3279 also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Bdellovibrio Bacteriovorus Peptidoglycan Deacetylase BD3279 (pdb code 5jp6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Bdellovibrio Bacteriovorus Peptidoglycan Deacetylase BD3279, PDB code: 5jp6:

Magnesium binding site 1 out of 1 in 5jp6

Go back to Magnesium Binding Sites List in 5jp6
Magnesium binding site 1 out of 1 in the Bdellovibrio Bacteriovorus Peptidoglycan Deacetylase BD3279


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bdellovibrio Bacteriovorus Peptidoglycan Deacetylase BD3279 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:26.6
occ:1.00
O A:HOH734 2.9 30.7 1.0
O A:HOH682 3.0 39.5 1.0
N A:MET155 3.2 22.7 1.0
N A:ASP366 3.3 22.9 1.0
N A:ALA365 3.4 22.3 1.0
CB A:ALA364 3.7 25.4 1.0
CB A:ASP366 3.8 23.4 1.0
O A:ARG153 3.8 23.9 1.0
CA A:ASP154 3.9 24.6 1.0
CA A:ALA365 4.0 23.2 1.0
CB A:ALA365 4.0 26.0 1.0
OD1 A:ASP154 4.0 31.2 1.0
CA A:MET155 4.0 23.8 1.0
C A:ALA364 4.0 22.4 1.0
N A:SER156 4.1 23.4 1.0
C A:ASP154 4.1 21.9 1.0
CA A:ALA364 4.1 22.4 1.0
C A:ALA365 4.1 23.0 1.0
CA A:ASP366 4.1 23.1 1.0
CB A:MET155 4.2 28.2 1.0
C A:MET155 4.3 23.2 1.0
O A:HOH538 4.6 47.4 1.0
O A:ASP366 4.7 23.6 1.0
CB A:ALA369 4.7 24.0 1.0
C A:ARG153 4.7 23.3 1.0
O A:HOH549 4.7 30.9 1.0
N A:ASP154 4.8 24.2 1.0
CG A:ASP154 4.8 32.2 1.0
CG A:MET155 4.9 26.5 1.0
CA A:SER156 4.9 24.0 1.0
CB A:ASP154 4.9 28.9 1.0
C A:ASP366 4.9 23.0 1.0
CB A:SER156 5.0 26.6 1.0

Reference:

C.Lambert, T.R.Lerner, N.K.Bui, H.Somers, S.Aizawa, S.Liddell, A.Clark, W.Vollmer, A.L.Lovering, R.E.Sockett. Interrupting Peptidoglycan Deacetylation During Bdellovibrio Predator-Prey Interaction Prevents Ultimate Destruction of Prey Wall, Liberating Bacterial-Ghosts. Sci Rep V. 6 26010 2016.
ISSN: ESSN 2045-2322
PubMed: 27211869
DOI: 10.1038/SREP26010
Page generated: Sun Sep 29 17:55:52 2024

Last articles

Cl in 2XXT
Cl in 2XXR
Cl in 2XVL
Cl in 2XX4
Cl in 2XX5
Cl in 2XVZ
Cl in 2XVX
Cl in 2XVS
Cl in 2XVK
Cl in 2XVN
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy