Atomistry » Magnesium » PDB 5jp6-5k0n » 5jxz
Atomistry »
  Magnesium »
    PDB 5jp6-5k0n »
      5jxz »

Magnesium in PDB 5jxz: A Low Magnesium Structure of the Isochorismate Synthase, Entc

Enzymatic activity of A Low Magnesium Structure of the Isochorismate Synthase, Entc

All present enzymatic activity of A Low Magnesium Structure of the Isochorismate Synthase, Entc:
5.4.4.2;

Protein crystallography data

The structure of A Low Magnesium Structure of the Isochorismate Synthase, Entc, PDB code: 5jxz was solved by K.M.Meneely, J.A.Sundlov, A.M.Gulick, A.L.Lamb, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.49 / 1.88
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.205, 80.205, 272.200, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 22.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the A Low Magnesium Structure of the Isochorismate Synthase, Entc (pdb code 5jxz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the A Low Magnesium Structure of the Isochorismate Synthase, Entc, PDB code: 5jxz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5jxz

Go back to Magnesium Binding Sites List in 5jxz
Magnesium binding site 1 out of 2 in the A Low Magnesium Structure of the Isochorismate Synthase, Entc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of A Low Magnesium Structure of the Isochorismate Synthase, Entc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:7.4
occ:1.00
O1 A:ISC402 1.8 22.0 0.5
O9 A:ISJ403 1.9 21.1 0.5
OE2 A:GLU241 1.9 22.8 1.0
OE2 A:GLU376 2.0 23.2 1.0
O A:HOH518 2.0 24.0 1.0
O A:HOH509 2.1 22.5 1.0
O8 A:ISJ403 2.4 20.8 0.5
O2 A:ISC402 2.4 21.2 0.5
C A:ISC402 2.5 21.6 0.5
C7 A:ISJ403 2.5 21.4 0.5
CD A:GLU241 2.9 23.8 1.0
CD A:GLU376 3.0 26.3 1.0
OE1 A:GLU376 3.2 23.7 1.0
OE1 A:GLU241 3.2 24.0 1.0
H A:GLY363 3.2 23.1 1.0
H A:GLY214 3.4 27.0 1.0
HZ1 A:LYS380 3.4 26.6 1.0
HZ3 A:LYS237 3.4 34.4 1.0
HG A:SER215 3.5 29.5 1.0
HA2 A:GLY214 3.7 22.8 1.0
HB1 A:ALA362 3.7 28.4 1.0
HB2 A:SER215 3.8 25.2 1.0
HZ1 A:LYS237 3.9 34.4 1.0
N A:GLY363 3.9 19.2 1.0
C3 A:ISJ403 4.0 20.4 0.5
C1 A:ISC402 4.0 20.8 0.5
HA A:ALA362 4.0 29.5 1.0
NZ A:LYS237 4.0 28.6 1.0
HZ2 A:LYS380 4.0 26.6 1.0
OG A:SER215 4.0 24.6 1.0
N A:GLY214 4.1 22.5 1.0
NZ A:LYS380 4.1 22.2 1.0
O A:HOH521 4.1 22.7 1.0
HZ2 A:LYS237 4.2 34.4 1.0
O A:GLY363 4.2 23.1 1.0
CA A:GLY214 4.3 19.0 1.0
CG A:GLU241 4.3 24.7 1.0
CG A:GLU376 4.4 20.2 1.0
H A:SER215 4.4 26.5 1.0
CB A:SER215 4.4 21.0 1.0
OE1 A:GLU373 4.4 24.6 1.0
HG2 A:GLU376 4.5 24.3 1.0
HA3 A:GLY363 4.5 21.2 1.0
N A:SER215 4.5 22.1 1.0
HG2 A:GLU241 4.5 29.7 1.0
CB A:ALA362 4.5 23.6 1.0
HZ3 A:LYS380 4.5 26.6 1.0
HG3 A:GLU241 4.6 29.7 1.0
H4 A:ISJ403 4.6 26.3 0.5
CA A:ALA362 4.6 24.6 1.0
C A:GLY214 4.6 22.1 1.0
CA A:GLY363 4.7 17.6 1.0
H2 A:ISC402 4.7 25.0 0.5
C A:ALA362 4.7 22.1 1.0
OD1 A:ASP238 4.8 24.9 1.0
HB2 A:ALA362 4.8 28.4 1.0
HG3 A:GLU376 4.8 24.3 1.0
C4 A:ISJ403 4.8 21.9 0.5
H6 A:ISC402 4.8 27.2 0.5
C2 A:ISC402 4.9 20.9 0.5
O A:HOH540 4.9 35.1 1.0
C A:GLY363 4.9 20.3 1.0
C2 A:ISJ403 5.0 20.9 0.5
C6 A:ISC402 5.0 22.6 0.5
HA A:ALA213 5.0 25.4 1.0

Magnesium binding site 2 out of 2 in 5jxz

Go back to Magnesium Binding Sites List in 5jxz
Magnesium binding site 2 out of 2 in the A Low Magnesium Structure of the Isochorismate Synthase, Entc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of A Low Magnesium Structure of the Isochorismate Synthase, Entc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:10.8
occ:1.00
O9 B:ISJ403 1.9 26.9 0.4
OE2 B:GLU241 1.9 25.4 1.0
OE2 B:GLU376 2.0 26.1 1.0
O B:HOH507 2.0 23.1 1.0
O B:HOH528 2.0 30.4 1.0
O1 B:ISC402 2.1 24.5 0.6
O8 B:ISJ403 2.2 24.7 0.4
O2 B:ISC402 2.4 26.0 0.6
C7 B:ISJ403 2.4 25.2 0.4
C B:ISC402 2.5 25.3 0.6
CD B:GLU241 2.9 27.6 1.0
CD B:GLU376 3.0 25.5 1.0
H B:GLY363 3.2 28.7 1.0
OE1 B:GLU241 3.2 30.6 1.0
OE1 B:GLU376 3.3 25.5 1.0
HZ1 B:LYS380 3.4 31.8 1.0
HG B:SER215 3.4 33.4 1.0
H B:GLY214 3.5 34.0 1.0
HZ3 B:LYS237 3.5 38.9 1.0
HB1 B:ALA362 3.7 31.0 1.0
HB2 B:SER215 3.8 34.4 1.0
C3 B:ISJ403 3.9 25.2 0.4
HA2 B:GLY214 3.9 34.4 1.0
O B:HOH502 3.9 26.7 1.0
N B:GLY363 3.9 23.9 1.0
OG B:SER215 4.0 27.8 1.0
HA B:ALA362 4.0 25.0 1.0
HZ2 B:LYS380 4.0 31.8 1.0
HZ1 B:LYS237 4.0 38.9 1.0
C1 B:ISC402 4.1 24.7 0.6
NZ B:LYS237 4.1 32.4 1.0
NZ B:LYS380 4.1 26.5 1.0
O B:GLY363 4.2 24.1 1.0
HZ2 B:LYS237 4.2 38.9 1.0
N B:GLY214 4.2 28.3 1.0
CG B:GLU241 4.3 33.5 1.0
CG B:GLU376 4.4 28.6 1.0
H B:SER215 4.4 32.7 1.0
CB B:SER215 4.4 28.7 1.0
HG2 B:GLU376 4.4 34.3 1.0
CB B:ALA362 4.4 25.8 1.0
CA B:GLY214 4.4 28.7 1.0
HG2 B:GLU241 4.5 40.2 1.0
HA3 B:GLY363 4.5 29.9 1.0
OE1 B:GLU373 4.5 25.7 1.0
N B:SER215 4.6 27.2 1.0
CA B:ALA362 4.6 20.9 1.0
H4 B:ISJ403 4.6 30.4 0.4
H2 B:ISC402 4.6 30.3 0.6
HG3 B:GLU241 4.6 40.2 1.0
HZ3 B:LYS380 4.6 31.8 1.0
CA B:GLY363 4.7 24.9 1.0
HB2 B:ALA362 4.7 31.0 1.0
C B:ALA362 4.7 22.7 1.0
OD1 B:ASP238 4.7 30.8 1.0
C B:GLY214 4.7 29.7 1.0
C4 B:ISJ403 4.8 25.3 0.4
H2 B:ISJ403 4.8 29.6 0.4
H6 B:ISC402 4.8 30.4 0.6
HG3 B:GLU376 4.9 34.3 1.0
C2 B:ISJ403 4.9 24.7 0.4
HE3 B:LYS380 4.9 30.9 1.0
C B:GLY363 4.9 22.5 1.0
C2 B:ISC402 4.9 25.2 0.6
C6 B:ISC402 5.0 25.3 0.6

Reference:

K.M.Meneely, J.A.Sundlov, A.M.Gulick, G.R.Moran, A.L.Lamb. An Open and Shut Case: the Interaction of Magnesium with Mst Enzymes. J.Am.Chem.Soc. V. 138 9277 2016.
ISSN: ESSN 1520-5126
PubMed: 27373320
DOI: 10.1021/JACS.6B05134
Page generated: Sun Sep 29 17:59:59 2024

Last articles

Cl in 2WK0
Cl in 2WJQ
Cl in 2WKA
Cl in 2WJW
Cl in 2WGS
Cl in 2WIU
Cl in 2WJP
Cl in 2WJ2
Cl in 2WJ9
Cl in 2WJ1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy