Magnesium in PDB 5jys: PRY1 Cap Domain

The structure of PRY1 Cap Domain, PDB code: 5jys was solved by O.A.Asojo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.55 / 1.90
Space group	I 41
Cell size a, b, c (Å), α, β, γ (°)	69.105, 69.105, 97.730, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 20.8

The binding sites of Magnesium atom in the PRY1 Cap Domain (pdb code 5jys). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the PRY1 Cap Domain, PDB code: 5jys:

Magnesium binding site 1 out of 1 in the PRY1 Cap Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of PRY1 Cap Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:45.0 occ:1.00 NE2 A:HIS250 2.6 38.3 1.0 NE2 A:HIS208 2.9 49.1 1.0 N A:LEU217 3.3 17.8 1.0 CD2 A:HIS250 3.4 28.4 1.0 CE1 A:HIS208 3.4 53.8 1.0 CE1 A:HIS250 3.6 42.9 1.0 CB A:LEU217 3.6 20.7 1.0 CG A:LEU217 3.7 24.8 1.0 CD2 A:HIS208 3.8 34.2 1.0 CA A:LEU217 4.0 20.6 1.0 CD1 A:LEU217 4.1 26.6 1.0 C A:ASN216 4.1 19.1 1.0 CA A:ASN216 4.1 19.1 1.0 O A:LEU217 4.2 21.2 1.0 O A:GLU215 4.3 21.2 1.0 ND1 A:HIS208 4.5 53.2 1.0 C A:LEU217 4.5 16.2 1.0 CG A:HIS250 4.6 32.7 1.0 ND1 A:HIS250 4.7 36.9 1.0 CG A:HIS208 4.7 47.9 1.0 N A:ASN216 4.9 21.1 1.0 C A:GLU215 4.9 21.8 1.0 OD1 A:ASN216 5.0 20.6 1.0

R.Darwiche, A.Kelleher, E.M.Hudspeth, R.Schneiter, O.A.Asojo. Structural and Functional Characterization of the Cap Domain of Pathogen-Related Yeast 1 (PRY1) Protein. Sci Rep V. 6 28838 2016.
ISSN: ESSN 2045-2322
PubMed: 27344972
DOI: 10.1038/SREP28838