Magnesium in PDB 5jzj: Crystal Structure of DCLK1-Kd in Complex with Amppn

All present enzymatic activity of Crystal Structure of DCLK1-Kd in Complex with Amppn:
2.7.11.1;

The structure of Crystal Structure of DCLK1-Kd in Complex with Amppn, PDB code: 5jzj was solved by O.Patel, I.Lucet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.35 / 1.71
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	56.390, 81.270, 59.610, 90.00, 92.10, 90.00
R / Rfree (%)	17.7 / 20.8

The binding sites of Magnesium atom in the Crystal Structure of DCLK1-Kd in Complex with Amppn (pdb code 5jzj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of DCLK1-Kd in Complex with Amppn, PDB code: 5jzj:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of DCLK1-Kd in Complex with Amppn


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of DCLK1-Kd in Complex with Amppn within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg701 b:16.4 occ:1.00 O1B A:AN2703 2.1 18.0 1.0 OD2 A:ASP533 2.1 17.5 1.0 O1A A:AN2703 2.1 15.9 1.0 OD1 A:ASN516 2.1 14.5 1.0 O A:HOH921 2.1 16.3 1.0 O A:HOH871 2.1 16.4 1.0 CG A:ASP533 3.1 13.3 1.0 CG A:ASN516 3.1 14.8 1.0 PB A:AN2703 3.2 20.6 1.0 PA A:AN2703 3.3 17.5 1.0 ND2 A:ASN516 3.5 12.4 1.0 O3A A:AN2703 3.5 19.6 1.0 CB A:ASP533 3.6 11.0 1.0 N3B A:AN2703 3.7 19.9 1.0 O A:HOH893 4.1 25.6 1.0 OD1 A:ASP533 4.2 14.7 1.0 OE2 A:GLU515 4.2 32.9 1.0 O A:HOH809 4.3 22.4 1.0 O5' A:AN2703 4.3 17.5 1.0 C5' A:AN2703 4.3 17.9 1.0 O2A A:AN2703 4.3 16.3 1.0 O A:HOH941 4.4 27.4 1.0 CG A:GLU515 4.5 18.5 1.0 CB A:ASN516 4.5 10.6 1.0 O A:HOH815 4.5 29.5 1.0 O2B A:AN2703 4.5 27.0 1.0 O A:GLU515 4.6 17.1 1.0 O3' A:AN2703 4.7 20.4 1.0 CA A:ASN516 4.8 11.2 1.0 CD A:GLU515 4.8 38.2 1.0 C A:GLU515 4.9 15.7 1.0 N A:ASN516 4.9 11.5 1.0 OD2 A:ASP511 5.0 16.9 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of DCLK1-Kd in Complex with Amppn


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of DCLK1-Kd in Complex with Amppn within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg901 b:16.4 occ:1.00 OD2 B:ASP533 2.1 17.2 1.0 OD1 B:ASN516 2.1 13.6 1.0 O1B B:AN2902 2.1 17.3 1.0 O B:HOH1134 2.1 17.5 1.0 O B:HOH1100 2.1 17.4 1.0 O2A B:AN2902 2.1 16.2 1.0 CG B:ASP533 3.1 16.8 1.0 CG B:ASN516 3.1 14.2 1.0 PB B:AN2902 3.3 21.2 1.0 PA B:AN2902 3.3 16.0 1.0 CB B:ASP533 3.5 12.3 1.0 ND2 B:ASN516 3.6 12.8 1.0 O3A B:AN2902 3.6 16.4 1.0 N3B B:AN2902 3.8 25.5 1.0 OE2 B:GLU515 4.2 26.3 1.0 O B:HOH1060 4.2 44.7 1.0 O B:HOH1088 4.2 32.3 1.0 OD1 B:ASP533 4.2 14.8 1.0 O B:HOH1025 4.3 23.8 1.0 O5' B:AN2902 4.3 17.9 1.0 C5' B:AN2902 4.3 18.2 1.0 O1A B:AN2902 4.4 15.3 1.0 CG B:GLU515 4.4 18.1 1.0 O B:HOH1138 4.4 29.8 1.0 CB B:ASN516 4.4 10.6 1.0 O B:HOH1007 4.4 23.1 1.0 O B:GLU515 4.5 17.7 1.0 O2B B:AN2902 4.6 27.5 1.0 O3' B:AN2902 4.6 19.0 1.0 CA B:ASN516 4.7 13.1 1.0 C B:GLU515 4.8 16.8 1.0 CD B:GLU515 4.8 30.9 1.0 N B:ASN516 4.9 14.1 1.0 OD2 B:ASP511 5.0 15.4 1.0 CA B:ASP533 5.0 11.4 1.0

O.Patel, W.Dai, M.Mentzel, M.D.Griffin, J.Serindoux, Y.Gay, S.Fischer, S.Sterle, A.Kropp, C.J.Burns, M.Ernst, M.Buchert, I.S.Lucet. Biochemical and Structural Insights Into Doublecortin-Like Kinase Domain 1. Structure V. 24 1550 2016.
ISSN: ISSN 1878-4186
PubMed: 27545623
DOI: 10.1016/J.STR.2016.07.008