Atomistry » Magnesium » PDB 5k0n-5kft » 5k3s
Atomistry »
  Magnesium »
    PDB 5k0n-5kft »
      5k3s »

Magnesium in PDB 5k3s: Crystal Structure of Arabidopsis Thaliana Acetohydroxyacid Synthase in Complex with A Pyrimidinyl-Benzoate Herbicide, Bispyribac-Sodium

Enzymatic activity of Crystal Structure of Arabidopsis Thaliana Acetohydroxyacid Synthase in Complex with A Pyrimidinyl-Benzoate Herbicide, Bispyribac-Sodium

All present enzymatic activity of Crystal Structure of Arabidopsis Thaliana Acetohydroxyacid Synthase in Complex with A Pyrimidinyl-Benzoate Herbicide, Bispyribac-Sodium:
2.2.1.6;

Protein crystallography data

The structure of Crystal Structure of Arabidopsis Thaliana Acetohydroxyacid Synthase in Complex with A Pyrimidinyl-Benzoate Herbicide, Bispyribac-Sodium, PDB code: 5k3s was solved by M.D.Garcia, T.Lonhienne, L.W.Guddat, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.03 / 2.87
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 179.715, 179.715, 184.775, 90.00, 90.00, 120.00
R / Rfree (%) 17.3 / 21.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Arabidopsis Thaliana Acetohydroxyacid Synthase in Complex with A Pyrimidinyl-Benzoate Herbicide, Bispyribac-Sodium (pdb code 5k3s). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Arabidopsis Thaliana Acetohydroxyacid Synthase in Complex with A Pyrimidinyl-Benzoate Herbicide, Bispyribac-Sodium, PDB code: 5k3s:

Magnesium binding site 1 out of 1 in 5k3s

Go back to Magnesium Binding Sites List in 5k3s
Magnesium binding site 1 out of 1 in the Crystal Structure of Arabidopsis Thaliana Acetohydroxyacid Synthase in Complex with A Pyrimidinyl-Benzoate Herbicide, Bispyribac-Sodium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Arabidopsis Thaliana Acetohydroxyacid Synthase in Complex with A Pyrimidinyl-Benzoate Herbicide, Bispyribac-Sodium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg701

b:41.4
occ:1.00
 O A:HIS567 2.1 48.2 1.0
OD1 A:ASP538 2.1 55.1 1.0
OD1 A:ASN565 2.1 45.1 1.0
O2B A:TP9704 2.1 36.8 1.0
O2A A:TP9704 2.1 35.5 1.0
O A:HOH920 2.2 37.6 1.0
CG A:ASN565 3.0 45.5 1.0
PB A:TP9704 3.2 49.2 1.0
PA A:TP9704 3.2 45.3 1.0
ND2 A:ASN565 3.3 42.2 1.0
CG A:ASP538 3.3 50.9 1.0
C A:HIS567 3.3 48.3 1.0
O3A A:TP9704 3.4 71.5 1.0
OD2 A:ASP538 3.8 44.8 1.0
O3B A:TP9704 3.9 54.1 1.0
O7 A:TP9704 3.9 49.8 1.0
N A:GLY569 3.9 50.8 1.0
N A:ASP538 3.9 45.5 1.0
N A:HIS567 4.0 47.3 1.0
CA A:HIS567 4.2 44.5 1.0
N A:LEU568 4.2 45.9 1.0
N A:GLY539 4.3 35.3 1.0
CA A:LEU568 4.3 47.7 1.0
CB A:ASN565 4.4 43.1 1.0
N A:ASN565 4.4 50.6 1.0
CB A:ASP538 4.5 47.5 1.0
O1B A:TP9704 4.5 35.9 1.0
O1A A:TP9704 4.5 40.0 1.0
CA A:GLY537 4.6 41.9 1.0
C A:GLY537 4.6 41.3 1.0
CA A:ASP538 4.7 51.0 1.0
C A:LEU568 4.7 57.0 1.0
O A:LEU563 4.7 52.5 1.0
CD1 A:LEU588 4.7 36.5 1.0
CA A:GLY569 4.8 50.3 1.0
N A:GLN566 4.8 56.7 1.0
CA A:ASN565 4.8 48.2 1.0
C A:ASN565 4.9 53.3 1.0
CB A:HIS567 4.9 39.9 1.0
C A:ASP538 5.0 47.7 1.0

Reference:

M.D.Garcia, A.Nouwens, T.G.Lonhienne, L.W.Guddat. Comprehensive Understanding of Acetohydroxyacid Synthase Inhibition By Different Herbicide Families. Proc. Natl. Acad. Sci. V. 114 E1091 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28137884
DOI: 10.1073/PNAS.1616142114
Page generated: Sun Sep 29 18:51:01 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy