Magnesium in PDB 5k5z: Structure of PNOB8 Para

The structure of Structure of PNOB8 Para, PDB code: 5k5z was solved by M.Schumacher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	76.40 / 2.37
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	102.700, 305.600, 84.300, 90.00, 90.00, 90.00
R / Rfree (%)	20.7 / 26.3

The binding sites of Magnesium atom in the Structure of PNOB8 Para (pdb code 5k5z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of PNOB8 Para, PDB code: 5k5z:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of PNOB8 Para


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of PNOB8 Para within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg702 b:42.1 occ:1.00 O2G A:ANP701 2.3 26.4 1.0 CG2 A:THR18 2.5 27.1 1.0 OD1 A:ASP41 2.6 37.1 1.0 OD2 A:ASP141 3.0 26.9 1.0 O2B A:ANP701 3.1 28.5 1.0 O A:THR142 3.1 34.9 1.0 CG A:ASP41 3.3 30.9 1.0 CB A:ASP41 3.4 31.3 1.0 OD1 A:ASP141 3.4 26.6 1.0 CG A:ASP141 3.6 28.1 1.0 CB A:THR18 3.6 30.7 1.0 PG A:ANP701 3.7 28.1 1.0 N A:THR18 3.9 26.6 1.0 O A:HOH825 4.0 43.5 1.0 C A:THR142 4.2 31.1 1.0 CB A:LYS17 4.2 18.5 1.0 PB A:ANP701 4.2 29.5 1.0 N3B A:ANP701 4.2 32.1 1.0 CA A:ASP41 4.2 27.4 1.0 CE A:LYS17 4.2 25.4 1.0 CA A:THR18 4.2 26.6 1.0 OD2 A:ASP41 4.4 31.6 1.0 N A:THR142 4.5 28.0 1.0 O3G A:ANP701 4.6 20.5 1.0 O1G A:ANP701 4.6 26.8 1.0 CB A:SER45 4.6 30.1 1.0 C A:LYS17 4.6 29.4 1.0 OG A:SER45 4.7 33.7 1.0 O1B A:ANP701 4.7 29.7 1.0 OG1 A:THR18 4.7 25.8 1.0 CA A:LYS17 4.9 25.1 1.0 NZ A:LYS17 4.9 30.1 1.0 CA A:THR142 5.0 21.2 1.0

Magnesium binding site 2 out of 2 in the Structure of PNOB8 Para


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of PNOB8 Para within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg702 b:33.3 occ:1.00 OG1 D:THR18 2.2 29.2 1.0 OD2 D:ASP41 2.3 30.4 1.0 O2G D:ANP701 2.3 26.4 1.0 O2B D:ANP701 2.5 28.5 1.0 O D:HOH815 2.7 43.5 1.0 CB D:THR18 3.3 23.6 1.0 CG D:ASP41 3.3 27.0 1.0 OD2 D:ASP141 3.5 24.9 1.0 PG D:ANP701 3.5 28.1 1.0 N D:THR18 3.7 21.8 1.0 PB D:ANP701 3.7 29.5 1.0 N3B D:ANP701 3.7 32.1 1.0 CB D:ASP41 3.8 25.8 1.0 CA D:THR18 3.9 28.7 1.0 O D:THR142 3.9 34.1 1.0 OD1 D:ASP141 3.9 25.5 1.0 CG D:ASP141 4.1 23.7 1.0 O D:HOH853 4.3 26.6 1.0 OD1 D:ASP41 4.3 27.8 1.0 NZ D:LYS17 4.3 18.9 1.0 CB D:SER45 4.3 26.3 1.0 CB D:LYS17 4.3 20.2 1.0 O1G D:ANP701 4.4 26.8 1.0 O2A D:ANP701 4.5 34.5 1.0 OG D:SER45 4.5 28.3 1.0 O1B D:ANP701 4.5 29.7 1.0 CG2 D:THR18 4.5 20.6 1.0 O3G D:ANP701 4.6 20.5 1.0 C D:LYS17 4.6 25.7 1.0 O3A D:ANP701 4.7 32.5 1.0 CA D:ASP41 4.7 29.5 1.0 NE2 D:GLN43 4.9 30.0 1.0 O1A D:ANP701 4.9 28.3 1.0 PA D:ANP701 4.9 27.9 1.0 C D:THR142 4.9 24.9 1.0 CA D:LYS17 5.0 27.3 1.0

M.A.Schumacher, N.K.Tonthat, J.Lee, F.A.Rodriguez-Castaneda, N.B.Chinnam, A.K.Kalliomaa-Sanford, I.W.Ng, M.T.Barge, P.L.Shaw, D.Barilla. Structures of Archaeal Dna Segregation Machinery Reveal Bacterial and Eukaryotic Linkages. Science V. 349 1120 2015.
ISSN: ESSN 1095-9203
PubMed: 26339031
DOI: 10.1126/SCIENCE.AAA9046