Magnesium in PDB 5keu: Crystal Structure of A Taurine Dioxygenase From Burkholderia Xenovorans

The structure of Crystal Structure of A Taurine Dioxygenase From Burkholderia Xenovorans, PDB code: 5keu was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.06 / 1.85
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	108.270, 133.130, 55.440, 90.00, 90.00, 90.00
R / Rfree (%)	15.1 / 17.8

The binding sites of Magnesium atom in the Crystal Structure of A Taurine Dioxygenase From Burkholderia Xenovorans (pdb code 5keu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Taurine Dioxygenase From Burkholderia Xenovorans, PDB code: 5keu:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Taurine Dioxygenase From Burkholderia Xenovorans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Taurine Dioxygenase From Burkholderia Xenovorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg409 b:9.6 occ:1.00 O A:ASN315 1.8 34.9 1.0 NE2 A:HIS115 2.0 16.7 1.0 NE2 A:HIS265 2.1 20.1 1.0 O A:HOH533 2.2 25.0 1.0 OD1 A:ASP117 2.2 28.7 1.0 O A:HOH648 2.3 28.8 1.0 C A:ASN315 2.8 47.7 1.0 CE1 A:HIS265 2.9 18.4 1.0 CD2 A:HIS115 3.0 15.8 1.0 CE1 A:HIS115 3.0 18.4 1.0 CD2 A:HIS265 3.1 16.6 1.0 OXT A:ASN315 3.2 46.2 1.0 CG A:ASP117 3.3 29.3 1.0 OD2 A:ASP117 3.6 25.8 1.0 ND1 A:HIS265 4.0 18.0 1.0 ND1 A:HIS115 4.1 15.6 1.0 CG A:HIS115 4.1 15.3 1.0 CA A:ASN315 4.1 56.0 1.0 O A:HOH754 4.2 34.7 1.0 CG A:HIS265 4.2 16.3 1.0 CB A:ASN315 4.5 49.0 1.0 O A:HOH747 4.5 33.4 1.0 CB A:ASP117 4.6 17.1 1.0 CA A:ASP117 4.8 14.3 1.0 O A:HOH796 5.0 33.3 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Taurine Dioxygenase From Burkholderia Xenovorans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Taurine Dioxygenase From Burkholderia Xenovorans within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg417 b:4.4 occ:1.00 NE2 B:HIS115 1.9 16.8 1.0 O B:HOH561 2.0 23.3 1.0 O B:ASN315 2.1 40.3 1.0 NE2 B:HIS265 2.1 18.9 1.0 O B:HOH676 2.1 22.8 1.0 OD1 B:ASP117 2.2 22.6 1.0 CE1 B:HIS115 2.9 19.4 1.0 CD2 B:HIS115 2.9 15.8 1.0 CE1 B:HIS265 2.9 19.3 1.0 C B:ASN315 3.0 42.9 1.0 CD2 B:HIS265 3.1 18.0 1.0 CG B:ASP117 3.2 25.5 1.0 OXT B:ASN315 3.3 39.5 1.0 OD2 B:ASP117 3.5 21.3 1.0 ND1 B:HIS115 4.0 14.0 1.0 CG B:HIS115 4.0 14.8 1.0 ND1 B:HIS265 4.1 19.9 1.0 CG B:HIS265 4.2 15.3 1.0 CA B:ASN315 4.3 35.3 1.0 O B:HOH745 4.4 29.3 1.0 O B:HOH729 4.4 27.2 1.0 CB B:ASP117 4.5 16.4 1.0 CB B:ASN315 4.6 32.3 1.0 O B:HOH791 4.7 32.0 1.0 O1 B:FMT415 4.7 27.0 0.6 CA B:ASP117 4.8 18.4 1.0 O B:HOH608 5.0 26.9 1.0

D.M.Dranow, D.Lorimer, T.E.Edwards. Crystal Structure of A Taurine Dioxygenase From Burkholderia Xenovorans To Be Published.