Magnesium in PDB 5kf7: Structure of Proline Utilization A From Sinorhizobium Meliloti Complexed with L-Tetrahydrofuroic Acid and Nad+ in Space Group P3121

The structure of Structure of Proline Utilization A From Sinorhizobium Meliloti Complexed with L-Tetrahydrofuroic Acid and Nad+ in Space Group P3121, PDB code: 5kf7 was solved by J.J.Tanner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	62.39 / 1.90
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	128.843, 128.843, 150.514, 90.00, 90.00, 120.00
R / Rfree (%)	17.4 / 20.3

The binding sites of Magnesium atom in the Structure of Proline Utilization A From Sinorhizobium Meliloti Complexed with L-Tetrahydrofuroic Acid and Nad+ in Space Group P3121 (pdb code 5kf7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Proline Utilization A From Sinorhizobium Meliloti Complexed with L-Tetrahydrofuroic Acid and Nad+ in Space Group P3121, PDB code: 5kf7:

Magnesium binding site 1 out of 1 in the Structure of Proline Utilization A From Sinorhizobium Meliloti Complexed with L-Tetrahydrofuroic Acid and Nad+ in Space Group P3121


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Proline Utilization A From Sinorhizobium Meliloti Complexed with L-Tetrahydrofuroic Acid and Nad+ in Space Group P3121 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2009 b:37.5 occ:1.00 O A:HOH2623 2.2 32.3 1.0 O A:HOH2246 2.4 29.6 1.0 O A:HOH2239 2.4 31.5 1.0 O2A A:NAD2002 2.5 21.0 1.0 O A:HOH2302 2.5 19.5 1.0 O A:HOH2647 2.8 45.8 1.0 O5B A:NAD2002 3.6 18.8 1.0 PA A:NAD2002 3.7 24.6 1.0 O A:HOH2163 3.9 24.3 1.0 O1N A:NAD2002 4.0 19.8 1.0 OE2 A:GLU734 4.0 29.8 1.0 O2N A:NAD2002 4.2 18.6 1.0 O A:HOH2111 4.2 28.9 1.0 O3 A:NAD2002 4.3 22.1 1.0 PN A:NAD2002 4.4 20.7 1.0 C2B A:NAD2002 4.6 21.7 1.0 OE1 A:GLU734 4.7 22.9 1.0 CD A:GLU734 4.8 28.8 1.0 O1A A:NAD2002 4.9 20.4 1.0 O A:HOH2658 4.9 25.5 1.0 C5B A:NAD2002 4.9 19.2 1.0

M.Luo, T.T.Gamage, B.W.Arentson, K.N.Schlasner, D.F.Becker, J.J.Tanner. Structures of Proline Utilization A (Puta) Reveal the Fold and Functions of the Aldehyde Dehydrogenase Superfamily Domain of Unknown Function. J.Biol.Chem. V. 291 24065 2016.
ISSN: ESSN 1083-351X
PubMed: 27679491
DOI: 10.1074/JBC.M116.756965