Magnesium in PDB 5kiw: P97 ND1-L198W in Complex with Vimp

All present enzymatic activity of P97 ND1-L198W in Complex with Vimp:
3.6.4.6;

The structure of P97 ND1-L198W in Complex with Vimp, PDB code: 5kiw was solved by W.K.Tang, D.Xia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.27 / 3.41
Space group	P 6 2 2
Cell size a, b, c (Å), α, β, γ (°)	153.772, 153.772, 240.641, 90.00, 90.00, 120.00
R / Rfree (%)	23.3 / 29.4

The binding sites of Magnesium atom in the P97 ND1-L198W in Complex with Vimp (pdb code 5kiw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the P97 ND1-L198W in Complex with Vimp, PDB code: 5kiw:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the P97 ND1-L198W in Complex with Vimp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of P97 ND1-L198W in Complex with Vimp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:75.2 occ:1.00 OG1 A:THR252 1.6 78.8 1.0 O3G A:ANP800 1.8 99.7 1.0 O2B A:ANP800 2.8 86.4 1.0 CB A:THR252 3.0 81.2 1.0 PG A:ANP800 3.0 88.8 1.0 O2G A:ANP800 3.1 87.0 1.0 OD2 A:ASP304 3.2 80.0 1.0 CG2 A:THR252 3.3 82.9 1.0 N3B A:ANP800 3.6 87.4 1.0 PB A:ANP800 3.8 91.4 1.0 CG A:ASP304 4.0 77.8 1.0 OD1 A:ASP304 4.0 81.0 1.0 CA A:THR252 4.0 79.8 1.0 O1A A:ANP800 4.1 79.8 1.0 N A:THR252 4.1 81.2 1.0 O1G A:ANP800 4.3 75.7 1.0 OE2 A:GLU305 4.4 0.2 1.0 O3A A:ANP800 4.8 84.8 1.0 CG A:GLU305 4.9 87.8 1.0 PA A:ANP800 4.9 79.7 1.0 O1B A:ANP800 5.0 99.8 1.0

Magnesium binding site 2 out of 2 in the P97 ND1-L198W in Complex with Vimp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of P97 ND1-L198W in Complex with Vimp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg801 b:34.0 occ:1.00 OG1 B:THR252 1.7 60.1 1.0 O1G B:ANP800 2.0 73.8 1.0 O1B B:ANP800 2.8 66.4 1.0 PG B:ANP800 3.0 70.8 1.0 O2G B:ANP800 3.1 63.5 1.0 CB B:THR252 3.1 61.3 1.0 OD2 B:ASP304 3.2 62.5 1.0 CG2 B:THR252 3.6 62.8 1.0 N3B B:ANP800 3.7 64.7 1.0 PB B:ANP800 3.8 64.5 1.0 OD1 B:ASP304 3.9 59.5 1.0 CG B:ASP304 3.9 59.2 1.0 N B:THR252 4.1 58.6 1.0 CA B:THR252 4.1 58.5 1.0 O3G B:ANP800 4.3 62.7 1.0 OE2 B:GLU305 4.4 0.2 1.0 O2A B:ANP800 4.6 68.0 1.0 CG B:GLU305 4.7 84.7 1.0 CE B:LYS251 4.7 58.2 1.0 O2B B:ANP800 4.8 74.8 1.0 NZ B:LYS251 4.9 58.5 1.0

W.K.Tang, T.Zhang, Y.Ye, D.Xia. Structural Basis For Nucleotide-Modulated P97 Association with the Er Membrane. Cell Discov V. 3 17045 2017.
ISSN: ESSN 2056-5968
PubMed: 29238611
DOI: 10.1038/CELLDISC.2017.45