Magnesium in PDB 5kiy: P97 ND1-A232E in Complex with Vimp

All present enzymatic activity of P97 ND1-A232E in Complex with Vimp:
3.6.4.6;

The structure of P97 ND1-A232E in Complex with Vimp, PDB code: 5kiy was solved by W.K.Tang, D.Xia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	125.57 / 2.79
Space group	P 6 2 2
Cell size a, b, c (Å), α, β, γ (°)	144.998, 144.998, 119.817, 90.00, 90.00, 120.00
R / Rfree (%)	19.3 / 25.6

The binding sites of Magnesium atom in the P97 ND1-A232E in Complex with Vimp (pdb code 5kiy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the P97 ND1-A232E in Complex with Vimp, PDB code: 5kiy:

Magnesium binding site 1 out of 1 in the P97 ND1-A232E in Complex with Vimp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of P97 ND1-A232E in Complex with Vimp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:92.3 occ:1.00 O A:HOH904 1.9 88.8 1.0 O3G A:ANP800 2.0 99.8 1.0 O2B A:ANP800 2.0 93.5 1.0 O A:HOH905 2.0 94.1 1.0 OG1 A:THR252 2.0 86.0 1.0 O A:HOH914 2.3 90.7 1.0 CB A:THR252 3.1 82.3 1.0 PB A:ANP800 3.1 81.8 1.0 PG A:ANP800 3.2 87.2 1.0 N3B A:ANP800 3.2 87.8 1.0 N A:THR252 3.8 83.2 1.0 O2A A:ANP800 3.9 83.4 1.0 OD2 A:ASP304 4.0 88.1 1.0 O1G A:ANP800 4.0 93.3 1.0 OD1 A:ASP304 4.0 83.9 1.0 CA A:THR252 4.0 81.6 1.0 CG2 A:THR252 4.0 77.9 1.0 O1B A:ANP800 4.1 83.8 1.0 O3A A:ANP800 4.3 93.7 1.0 O2G A:ANP800 4.3 90.7 1.0 CG A:ASP304 4.4 83.0 1.0 PA A:ANP800 4.5 85.9 1.0 CB A:LYS251 4.9 88.3 1.0 C A:LYS251 4.9 84.2 1.0 CE A:LYS251 5.0 93.2 1.0

W.K.Tang, T.Zhang, Y.Ye, D.Xia. Structural Basis For Nucleotide-Modulated P97 Association with the Er Membrane. Cell Discov V. 3 17045 2017.
ISSN: ESSN 2056-5968
PubMed: 29238611
DOI: 10.1038/CELLDISC.2017.45