Atomistry » Magnesium » PDB 5kfu-5ktd » 5klx
Atomistry »
  Magnesium »
    PDB 5kfu-5ktd »
      5klx »

Magnesium in PDB 5klx: Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110

Enzymatic activity of Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110

All present enzymatic activity of Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110:
5.2.1.8;

Protein crystallography data

The structure of Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110, PDB code: 5klx was solved by D.Fox Iii, T.E.Edwards, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.79 / 2.45
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 107.890, 34.110, 119.920, 90.00, 115.45, 90.00
R / Rfree (%) 19.8 / 25.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110 (pdb code 5klx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110, PDB code: 5klx:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5klx

Go back to Magnesium Binding Sites List in 5klx
Magnesium binding site 1 out of 2 in the Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:14.7
occ:1.00
OD1 A:ASP51 2.0 38.1 1.0
O A:PRO52 2.2 22.8 1.0
O A:HOH349 2.5 39.9 1.0
CG A:ASP51 2.8 36.4 1.0
OD2 A:ASP51 3.0 41.4 1.0
C A:PRO52 3.4 20.7 1.0
O A:HOH303 3.8 28.8 1.0
C A:ASP51 4.0 37.9 1.0
N A:PRO52 4.1 38.6 1.0
O D:HOH326 4.2 39.9 1.0
O A:ASP51 4.2 30.4 1.0
CB A:ASP51 4.2 36.0 1.0
O A:HOH304 4.3 57.0 1.0
CA A:PRO52 4.3 29.1 1.0
N A:PHE53 4.4 19.3 1.0
CA A:ASP51 4.5 38.6 1.0
CA A:PHE53 4.6 19.6 1.0
CB A:PRO52 4.8 31.1 1.0
CD A:PRO52 4.9 27.0 1.0

Magnesium binding site 2 out of 2 in 5klx

Go back to Magnesium Binding Sites List in 5klx
Magnesium binding site 2 out of 2 in the Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg202

b:19.5
occ:1.00
OD1 B:ASP51 2.1 51.5 1.0
OD1 D:ASP51 2.1 49.2 1.0
O D:PRO52 2.1 29.5 1.0
O B:PRO52 2.3 33.9 1.0
O D:HOH311 2.6 29.6 1.0
CG B:ASP51 2.7 50.0 1.0
OD2 B:ASP51 2.7 46.8 1.0
O B:HOH318 2.8 35.0 1.0
CG D:ASP51 3.1 44.2 1.0
C D:PRO52 3.3 37.2 1.0
OD2 D:ASP51 3.5 44.3 1.0
C B:PRO52 3.6 38.3 1.0
O B:HOH307 4.0 37.5 1.0
N D:PRO52 4.1 50.5 1.0
C D:ASP51 4.1 47.0 1.0
O B:HOH310 4.1 44.5 1.0
CB B:ASP51 4.2 50.5 1.0
N D:PHE53 4.2 27.9 1.0
CA D:PRO52 4.3 44.5 1.0
C B:ASP51 4.3 49.9 1.0
CA D:PHE53 4.4 27.8 1.0
N B:PRO52 4.4 46.5 1.0
CB D:ASP51 4.4 36.4 1.0
O D:HOH327 4.4 35.1 1.0
O D:ASP51 4.5 49.1 1.0
N B:PHE53 4.5 33.3 1.0
CA B:PRO52 4.5 37.8 1.0
O B:ASP51 4.5 47.7 1.0
CA D:ASP51 4.6 41.6 1.0
CA B:PHE53 4.6 31.9 1.0
CD D:PRO52 4.6 36.0 1.0
CA B:ASP51 4.7 51.4 1.0
CB D:PRO52 4.9 41.3 1.0
N D:ALA54 4.9 43.3 1.0

Reference:

D.D.Lorimer, D.Fox Iii, F.Seufert, T.E.Edwards, U.Holzgrabe. Crystal Structure of Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed with SF110 To Be Published.
Page generated: Sun Sep 29 19:08:34 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy