Magnesium in PDB 5kpt: PANK3-Amppnp Complex

All present enzymatic activity of PANK3-Amppnp Complex:
2.7.1.33;

The structure of PANK3-Amppnp Complex, PDB code: 5kpt was solved by S.W.White, M.Yun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.64 / 2.30
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	97.463, 97.463, 68.161, 90.00, 90.00, 120.00
R / Rfree (%)	17.6 / 23.6

The binding sites of Magnesium atom in the PANK3-Amppnp Complex (pdb code 5kpt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the PANK3-Amppnp Complex, PDB code: 5kpt:

Magnesium binding site 1 out of 1 in the PANK3-Amppnp Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of PANK3-Amppnp Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:31.0 occ:1.00 O2B A:ANP402 1.9 33.5 1.0 O A:HOH502 2.0 31.4 1.0 O A:HOH504 2.1 33.1 1.0 O A:HOH507 2.2 19.7 1.0 O3G A:ANP402 2.2 33.3 1.0 O A:HOH525 2.2 18.5 1.0 PB A:ANP402 3.2 21.9 1.0 PG A:ANP402 3.4 24.8 1.0 N3B A:ANP402 3.7 30.6 1.0 O1 A:EDO403 3.9 45.2 1.0 O3A A:ANP402 3.9 28.3 1.0 O1A A:ANP402 4.0 30.1 1.0 NZ A:LYS24 4.0 20.6 1.0 O2G A:ANP402 4.1 24.2 1.0 OE2 A:GLU138 4.1 65.0 1.0 OD2 A:ASP17 4.2 28.6 1.0 O A:HOH511 4.2 27.4 1.0 OD1 A:ASP17 4.3 24.8 1.0 CA A:GLY19 4.4 26.1 1.0 PA A:ANP402 4.4 27.6 1.0 O1B A:ANP402 4.4 22.5 1.0 C1 A:EDO403 4.5 35.0 1.0 O1G A:ANP402 4.6 31.2 1.0 ND2 A:ASN189 4.6 32.5 1.0 CG A:ASP17 4.6 30.6 1.0 CE A:LYS24 4.8 21.5 1.0 O2A A:ANP402 4.8 23.0 1.0 OD1 A:ASN189 4.9 33.3 1.0

C.Subramanian, M.K.Yun, J.Yao, L.K.Sharma, R.E.Lee, S.W.White, S.Jackowski, C.O.Rock. Allosteric Regulation of Mammalian Pantothenate Kinase. J.Biol.Chem. V. 291 22302 2016.
ISSN: ESSN 1083-351X
PubMed: 27555321
DOI: 10.1074/JBC.M116.748061