Magnesium in PDB 5kpz: PANK3-Adp-Phosphopantothenate Complex

All present enzymatic activity of PANK3-Adp-Phosphopantothenate Complex:
2.7.1.33;

The structure of PANK3-Adp-Phosphopantothenate Complex, PDB code: 5kpz was solved by S.W.White, M.Yun, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.47 / 2.40
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	99.488, 99.488, 68.542, 90.00, 90.00, 120.00
R / Rfree (%)	17.3 / 21.6

The binding sites of Magnesium atom in the PANK3-Adp-Phosphopantothenate Complex (pdb code 5kpz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the PANK3-Adp-Phosphopantothenate Complex, PDB code: 5kpz:

Magnesium binding site 1 out of 1 in the PANK3-Adp-Phosphopantothenate Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of PANK3-Adp-Phosphopantothenate Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:79.3 occ:1.00 O A:HOH508 2.0 68.6 1.0 O2B A:ADP402 2.1 46.0 1.0 O A:HOH501 2.2 48.5 1.0 O7 A:PAZ401 2.2 83.8 1.0 O A:HOH515 2.3 37.3 1.0 O A:HOH519 2.3 39.4 1.0 PB A:ADP402 3.5 40.8 1.0 P1 A:PAZ401 3.7 91.6 1.0 OE2 A:GLU138 3.9 85.7 1.0 OD2 A:ASP17 4.0 42.8 1.0 O1B A:ADP402 4.0 43.7 1.0 NZ A:LYS24 4.0 26.6 1.0 O1A A:ADP402 4.0 42.5 1.0 O8 A:PAZ401 4.1 79.3 1.0 O3A A:ADP402 4.2 37.6 1.0 ND2 A:ASN189 4.2 35.2 1.0 O A:HOH518 4.3 42.6 1.0 OD1 A:ASP17 4.4 41.5 1.0 O A:HOH531 4.6 84.7 1.0 O2 A:PAZ401 4.6 90.0 1.0 PA A:ADP402 4.6 37.7 1.0 O6 A:PAZ401 4.6 77.9 1.0 O3B A:ADP402 4.6 43.2 1.0 CG A:ASP17 4.6 45.3 1.0 CD A:GLU138 4.6 84.8 1.0 CA A:GLY19 4.6 40.1 1.0 OD1 A:ASN189 4.8 47.6 1.0 CG A:ASN189 4.9 40.6 1.0 CE A:LYS24 4.9 32.8 1.0 O2A A:ADP402 5.0 38.3 1.0

C.Subramanian, M.K.Yun, J.Yao, L.K.Sharma, R.E.Lee, S.W.White, S.Jackowski, C.O.Rock. Allosteric Regulation of Mammalian Pantothenate Kinase. J.Biol.Chem. V. 291 22302 2016.
ISSN: ESSN 1083-351X
PubMed: 27555321
DOI: 10.1074/JBC.M116.748061